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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036671 through 18771 annotations produced 1 hits



/// GA22148 (CG9951 /// DpseGA22148):

Annotation Number : CG9951
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036671
Gbrowse : chr3L:16856261-16858099 (+) // 100.0 //
Probeset : 1632586_at
Accessions : protein= NP_648929;, nucleotide= NM_140672;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036671.
VDRC has 4 RNAi stocks for FBgn0036671 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 ± 54 of 4 1.20Up
Head86 ± 54 of 4 1.00None
Eye76 ± 34 of 4 0.86Down
Thoracicoabdominal ganglion109 ± 24 of 4 1.20Up
Salivary gland93 ± 44 of 4 1.06None
Crop90 ± 44 of 4 1.00None
Midgut44 ± 33 of 4 0.50Down
Tubule88 ± 14 of 4 1.00None
Hindgut78 ± 24 of 4 0.90Down
Heart86 ± 34 of 4 0.98None
Fat body84 ± 74 of 4 0.96None
Ovary189 ± 24 of 4 2.10Up
Testis59 ± 24 of 4 0.70Down
Male accessory glands155 ± 74 of 4 1.80Up
Virgin spermatheca129 ± 44 of 4 1.46Up
Mated spermatheca116 ± 44 of 4 1.32Up
Adult carcass87 ± 34 of 4 1.00None
Larval CNS160 ± 34 of 4 1.81Up
Larval Salivary gland131 ± 14 of 4 1.49Up
Larval midgut64 ± 14 of 4 0.73Down
Larval tubule134 ± 54 of 4 1.50Up
Larval hindgut95 ± 44 of 4 1.08None
Larval fat body71 ± 24 of 4 0.80Down
Larval trachea105 ± 64 of 4 1.20Up
Larval carcass63 ± 24 of 4 0.71Down
S2 cells (growing)91 ± 14 of 4 1.04None
Whole fly88 ± 14 of 4

Looking for FBgn0036671. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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