FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036678 through 18771 annotations produced 3 hits

(CG11905):

Annotation Number : CG11905
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036678
Gbrowse : chr3L:16924267-16928632 (-) // 100.0 //
Probeset : 1632514_s_at
Accessions : protein= NP_001097624; /// NP_001097625; /// NP_001097626; /// NP_648936; /// NP_730215; /// NP_730216; /// NP_730217; /// NP_730218; /// NP_730219; /// NP_730220;, nucleotide= NM_001104154; /// NM_001104155; /// NM_001104156; /// NM_140679; /// NM_168695; /// NM_168696; /// NM_168697; /// NM_168698; /// NM_168699; /// NM_168700;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036678.
BDGP gene expression has embryonic in situ data for CG11905: 31 pix of staining in 12 body parts.
BioGrid reports that CG11905 interacts with CG14625 CG18259 CG32030 CG13045 CG3613 CG4887 CG5062 CG8495 CG8948 .
VDRC has 2 RNAi stocks for FBgn0036678 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	0.50	Down
Head	7 ± 2	0 of 4	0.60	None
Eye	3 ± 0	0 of 4	0.27	Down
Thoracicoabdominal ganglion	7 ± 0	0 of 4	0.60	None
Salivary gland	18 ± 3	0 of 4	1.48	None
Crop	4 ± 1	0 of 4	0.40	Down
Midgut	11 ± 0	0 of 4	0.90	None
Tubule	4 ± 1	0 of 4	0.30	Down
Hindgut	5 ± 1	0 of 4	0.40	Down
Heart	2 ± 0	0 of 4	0.20	Down
Fat body	9 ± 5	0 of 4	0.79	None
Ovary	2 ± 0	0 of 4	0.20	Down
Testis	99 ± 4	4 of 4	7.90	Up
Male accessory glands	6 ± 2	0 of 4	0.60	None
Virgin spermatheca	3 ± 1	0 of 4	0.25	Down
Mated spermatheca	8 ± 1	0 of 4	0.69	None
Adult carcass	8 ± 3	0 of 4	0.70	None
Larval CNS	3 ± 2	0 of 4	0.31	Down
Larval Salivary gland	8 ± 2	0 of 4	0.64	None
Larval midgut	15 ± 1	1 of 4	1.24	None
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	21 ± 2	3 of 4	1.70	Up
Larval fat body	11 ± 2	0 of 4	0.90	None
Larval trachea	8 ± 4	1 of 4	0.72	None
Larval carcass	9 ± 1	2 of 4	0.78	None
S2 cells (growing)	4 ± 0	0 of 4	0.37	Down
Whole fly	12 ± 1	0 of 4

(CG11905):

Annotation Number : CG11905
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036678
Gbrowse : chr3L:16923216-16928632 (-) // 100.0 //
Probeset : 1637724_s_at
Accessions : protein= NP_001097624; /// NP_001097625; /// NP_001097626; /// NP_648936; /// NP_730215; /// NP_730216; /// NP_730217; /// NP_730218; /// NP_730219; /// NP_730220;, nucleotide= NM_001104154; /// NM_001104155; /// NM_001104156; /// NM_140679; /// NM_168695; /// NM_168696; /// NM_168697; /// NM_168698; /// NM_168699; /// NM_168700;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036678.
BDGP gene expression has embryonic in situ data for CG11905: 31 pix of staining in 12 body parts.
BioGrid reports that CG11905 interacts with CG14625 CG18259 CG32030 CG13045 CG3613 CG4887 CG5062 CG8495 CG8948 .
VDRC has 2 RNAi stocks for FBgn0036678 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.30	None
Head	1 ± 0	0 of 4	0.40	None
Eye	0 ± 0	0 of 4	0.35	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.80	None
Salivary gland	2 ± 0	0 of 4	0.90	None
Crop	1 ± 0	0 of 4	0.70	None
Midgut	1 ± 0	0 of 4	0.60	None
Tubule	2 ± 0	0 of 4	0.90	None
Hindgut	1 ± 0	0 of 4	0.70	None
Heart	2 ± 1	0 of 4	0.79	None
Fat body	1 ± 0	0 of 4	0.46	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	8 ± 1	0 of 4	3.40	Up
Male accessory glands	2 ± 0	0 of 4	0.80	None
Virgin spermatheca	0 ± 0	0 of 4	0.31	None
Mated spermatheca	1 ± 0	0 of 4	0.37	None
Adult carcass	2 ± 0	0 of 4	1.00	None
Larval CNS	1 ± 1	0 of 4	0.41	None
Larval Salivary gland	1 ± 0	0 of 4	0.67	None
Larval midgut	1 ± 0	0 of 4	0.48	None
Larval tubule	2 ± 1	0 of 4	0.90	None
Larval hindgut	29 ± 4	3 of 4	11.30	Up
Larval fat body	1 ± 0	0 of 4	0.50	None
Larval trachea	2 ± 3	0 of 4	1.09	None
Larval carcass	1 ± 0	0 of 4	0.54	None
S2 cells (growing)	1 ± 0	0 of 4	0.40	None
Whole fly	2 ± 0	0 of 4

(CG11905):

Annotation Number : CG11905
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036678
Gbrowse : chr3L:16922056-16928632 (-) // 100.0 //
Probeset : 1638986_s_at
Accessions : protein= NP_001097624; /// NP_001097625; /// NP_001097626; /// NP_648936; /// NP_730215; /// NP_730216; /// NP_730217; /// NP_730218; /// NP_730219; /// NP_730220;, nucleotide= NM_001104154; /// NM_001104155; /// NM_001104156; /// NM_140679; /// NM_168695; /// NM_168696; /// NM_168697; /// NM_168698; /// NM_168699; /// NM_168700;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036678.
BDGP gene expression has embryonic in situ data for CG11905: 31 pix of staining in 12 body parts.
BioGrid reports that CG11905 interacts with CG14625 CG18259 CG32030 CG13045 CG3613 CG4887 CG5062 CG8495 CG8948 .
VDRC has 2 RNAi stocks for FBgn0036678 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.40	Down
Head	5 ± 2	0 of 4	0.80	None
Eye	2 ± 0	0 of 4	0.35	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.60	None
Salivary gland	8 ± 3	0 of 4	1.13	None
Crop	4 ± 1	0 of 4	0.60	None
Midgut	3 ± 0	0 of 4	0.40	Down
Tubule	5 ± 1	0 of 4	0.70	Down
Hindgut	4 ± 1	0 of 4	0.60	None
Heart	3 ± 0	0 of 4	0.42	Down
Fat body	4 ± 4	0 of 4	0.59	None
Ovary	3 ± 1	0 of 4	0.50	Down
Testis	12 ± 0	4 of 4	1.70	Up
Male accessory glands	5 ± 1	0 of 4	0.70	None
Virgin spermatheca	2 ± 1	0 of 4	0.34	Down
Mated spermatheca	4 ± 0	0 of 4	0.68	None
Adult carcass	8 ± 2	0 of 4	1.10	None
Larval CNS	2 ± 1	0 of 4	0.41	Down
Larval Salivary gland	12 ± 2	1 of 4	1.68	None
Larval midgut	2 ± 0	0 of 4	0.38	Down
Larval tubule	6 ± 0	0 of 4	0.80	None
Larval hindgut	33 ± 4	4 of 4	4.68	Up
Larval fat body	4 ± 2	0 of 4	0.60	None
Larval trachea	12 ± 2	2 of 4	1.68	Up
Larval carcass	4 ± 2	0 of 4	0.64	None
S2 cells (growing)	1 ± 0	0 of 4	0.15	Down
Whole fly	7 ± 0	0 of 4

Looking for FBgn0036678. 3 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720