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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036679 through 18771 annotations produced 1 hits



(CG13022):

Annotation Number : CG13022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036679
Gbrowse : chr3L:16931445-16931982 (-) // 100.0 //
Probeset : 1638114_at
Accessions : protein= NP_648937;, nucleotide= NM_140680;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036679.
BioGrid reports that CG13022 interacts with CG14228 CG15112 CG5424 CG13067 CG15099 CG17018 CG17265 CG18290 CG18584 CG3052 CG3929 CG4264 CG5933 CG6725 CG7109 CG7725 CG7951 CG8677 CG9396 .
VDRC has 3 RNAi stocks for FBgn0036679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.90None
Head15 ± 33 of 4 4.90Up
Eye68 ± 134 of 421.40Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.90None
Salivary gland10 ± 31 of 4 3.29None
Crop2 ± 10 of 4 0.90None
Midgut3 ± 10 of 4 0.90None
Tubule3 ± 00 of 4 1.00None
Hindgut4 ± 10 of 4 1.40None
Heart3 ± 11 of 4 1.23None
Fat body7 ± 20 of 4 2.21None
Ovary4 ± 01 of 4 1.30None
Testis11 ± 14 of 4 3.50Up
Male accessory glands3 ± 10 of 4 1.00None
Virgin spermatheca7 ± 01 of 4 2.38None
Mated spermatheca4 ± 21 of 4 1.51None
Adult carcass3 ± 10 of 4 1.20None
Larval CNS3 ± 11 of 4 1.02None
Larval Salivary gland2 ± 00 of 4 0.83None
Larval midgut7 ± 01 of 4 2.45None
Larval tubule3 ± 00 of 4 0.90None
Larval hindgut2 ± 00 of 4 0.75None
Larval fat body6 ± 10 of 4 2.00None
Larval trachea5 ± 12 of 4 1.70None
Larval carcass2 ± 00 of 4 0.82None
S2 cells (growing)3 ± 10 of 4 0.95None
Whole fly3 ± 10 of 4

Looking for FBgn0036679. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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