FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036680 through 18771 annotations produced 1 hits

CG9665 (Cpr73D):

Annotation Number : CG9665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036680
Gbrowse : chr3L:16932201-16934739 (-) // 100.0 //
Probeset : 1635623_at
Accessions : protein= NP_001097627;, nucleotide= NM_001104157;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0036680.
BDGP gene expression has embryonic in situ data for CG9665: 10 pix of staining in 2 body parts.
BioGrid reports that CG9665 interacts with CG9704 .
VDRC has 2 RNAi stocks for FBgn0036680 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	0.30	Down
Head	92 ± 5	4 of 4	3.70	Up
Eye	47 ± 4	4 of 4	1.87	Up
Thoracicoabdominal ganglion	12 ± 2	0 of 4	0.50	Down
Salivary gland	105 ± 8	4 of 4	4.17	Up
Crop	5 ± 1	0 of 4	0.20	Down
Midgut	5 ± 1	0 of 4	0.20	Down
Tubule	9 ± 1	0 of 4	0.40	Down
Hindgut	18 ± 4	2 of 4	0.70	None
Heart	13 ± 2	2 of 4	0.53	Down
Fat body	28 ± 6	3 of 4	1.11	None
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	8 ± 1	4 of 4	0.30	Down
Male accessory glands	11 ± 3	0 of 4	0.40	Down
Virgin spermatheca	59 ± 4	4 of 4	2.36	Up
Mated spermatheca	40 ± 4	4 of 4	1.60	Up
Adult carcass	115 ± 5	4 of 4	4.50	Up
Larval CNS	2 ± 1	0 of 4	0.10	Down
Larval Salivary gland	4 ± 1	0 of 4	0.16	Down
Larval midgut	4 ± 1	0 of 4	0.18	Down
Larval tubule	19 ± 2	2 of 4	0.80	None
Larval hindgut	5 ± 1	0 of 4	0.22	Down
Larval fat body	12 ± 2	0 of 4	0.50	Down
Larval trachea	3 ± 3	0 of 4	0.15	Down
Larval carcass	7 ± 3	0 of 4	0.29	Down
S2 cells (growing)	4 ± 1	0 of 4	0.19	Down
Whole fly	25 ± 2	4 of 4

Looking for FBgn0036680. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720