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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036680 through 18771 annotations produced 1 hits

CG9665 (Cpr73D):

Annotation Number : CG9665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036680
Gbrowse : chr3L:16932201-16934739 (-) // 100.0 //
Probeset : 1635623_at
Accessions : protein= NP_001097627;, nucleotide= NM_001104157;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0036680.
BDGP gene expression has embryonic in situ data for CG9665: 10 pix of staining in 2 body parts.
BioGrid reports that CG9665 interacts with CG9704 .
VDRC has 2 RNAi stocks for FBgn0036680 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.30Down
Head92 54 of 4 3.70Up
Eye47 44 of 4 1.87Up
Thoracicoabdominal ganglion12 20 of 4 0.50Down
Salivary gland105 84 of 4 4.17Up
Crop5 10 of 4 0.20Down
Midgut5 10 of 4 0.20Down
Tubule9 10 of 4 0.40Down
Hindgut18 42 of 4 0.70None
Heart13 22 of 4 0.53Down
Fat body28 63 of 4 1.11None
Ovary2 00 of 4 0.10Down
Testis8 14 of 4 0.30Down
Male accessory glands11 30 of 4 0.40Down
Virgin spermatheca59 44 of 4 2.36Up
Mated spermatheca40 44 of 4 1.60Up
Adult carcass115 54 of 4 4.50Up
Larval CNS2 10 of 4 0.10Down
Larval Salivary gland4 10 of 4 0.16Down
Larval midgut4 10 of 4 0.18Down
Larval tubule19 22 of 4 0.80None
Larval hindgut5 10 of 4 0.22Down
Larval fat body12 20 of 4 0.50Down
Larval trachea3 30 of 4 0.15Down
Larval carcass7 30 of 4 0.29Down
S2 cells (growing)4 10 of 4 0.19Down
Whole fly25 24 of 4

Looking for FBgn0036680. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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