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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036681 through 18771 annotations produced 1 hits



(CG13027):

Annotation Number : Stencil:3L:16890571:16894633:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036681
Gbrowse : chr3L:16934791-16938853 (+) // 100.0 //
Probeset : 1630210_at
Accessions : protein= NP_001097628;, nucleotide= NM_001104158;
Interpro : 0005549 // odorant binding // inferred from electronic annotation
FlyMine data for FBgn0036681.
VDRC has 2 RNAi stocks for FBgn0036681 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 1.00None
Head5 ± 11 of 4 1.00None
Eye7 ± 01 of 4 1.29None
Thoracicoabdominal ganglion6 ± 11 of 4 1.10None
Salivary gland5 ± 20 of 4 0.96None
Crop5 ± 10 of 4 1.00None
Midgut2 ± 00 of 4 0.40None
Tubule7 ± 10 of 4 1.50None
Hindgut5 ± 10 of 4 1.00None
Heart8 ± 02 of 4 1.50None
Fat body8 ± 30 of 4 1.48None
Ovary2 ± 00 of 4 0.40None
Testis2 ± 00 of 4 0.40None
Male accessory glands6 ± 20 of 4 1.20None
Virgin spermatheca2 ± 00 of 4 0.39None
Mated spermatheca3 ± 10 of 4 0.62None
Adult carcass15 ± 42 of 4 2.80None
Larval CNS3 ± 10 of 4 0.57None
Larval Salivary gland2 ± 00 of 4 0.42None
Larval midgut3 ± 00 of 4 0.55None
Larval tubule9 ± 02 of 4 1.70None
Larval hindgut4 ± 10 of 4 0.73None
Larval fat body5 ± 10 of 4 0.90None
Larval trachea2 ± 00 of 4 0.37None
Larval carcass3 ± 10 of 4 0.62None
S2 cells (growing)5 ± 00 of 4 0.93None
Whole fly5 ± 20 of 4

Looking for FBgn0036681. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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