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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036684 through 18771 annotations produced 1 hits



(CG3764):

Annotation Number : CG3764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036684
Gbrowse : chr3L:16987810-16995374 (-) // 100.0 //
Probeset : 1634563_at
Accessions : protein= NP_648943;, nucleotide= NM_140686;
FlyMine data for FBgn0036684.
BDGP gene expression has embryonic in situ data for CG3764: 24 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0036684 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 44 of 4 1.70Up
Head127 34 of 4 1.00None
Eye137 44 of 4 1.12None
Thoracicoabdominal ganglion202 44 of 4 1.60Up
Salivary gland210 74 of 4 1.70Up
Crop257 64 of 4 2.10Up
Midgut85 14 of 4 0.70Down
Tubule168 244 of 4 1.40None
Hindgut489 114 of 4 4.00Up
Heart169 154 of 4 1.38None
Fat body104 184 of 4 0.84None
Ovary288 54 of 4 2.30Up
Testis34 34 of 4 0.30Down
Male accessory glands757 344 of 4 6.10Up
Virgin spermatheca164 234 of 4 1.33None
Mated spermatheca138 84 of 4 1.12None
Adult carcass124 84 of 4 1.00None
Larval CNS309 184 of 4 2.50Up
Larval Salivary gland100 104 of 4 0.82None
Larval midgut96 44 of 4 0.78Down
Larval tubule195 104 of 4 1.60Up
Larval hindgut474 374 of 4 3.85Up
Larval fat body272 384 of 4 2.20Up
Larval trachea72 104 of 4 0.59Down
Larval carcass135 164 of 4 1.10None
S2 cells (growing)201 64 of 4 1.63Up
Whole fly123 84 of 4

Looking for FBgn0036684. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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