FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036684 through 18771 annotations produced 1 hits

(CG3764):

Annotation Number : CG3764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036684
Gbrowse : chr3L:16987810-16995374 (-) // 100.0 //
Probeset : 1634563_at
Accessions : protein= NP_648943;, nucleotide= NM_140686;
FlyMine data for FBgn0036684.
BDGP gene expression has embryonic in situ data for CG3764: 24 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0036684 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	213 ± 4	4 of 4	1.70	Up
Head	127 ± 3	4 of 4	1.00	None
Eye	137 ± 4	4 of 4	1.12	None
Thoracicoabdominal ganglion	202 ± 4	4 of 4	1.60	Up
Salivary gland	210 ± 7	4 of 4	1.70	Up
Crop	257 ± 6	4 of 4	2.10	Up
Midgut	85 ± 1	4 of 4	0.70	Down
Tubule	168 ± 24	4 of 4	1.40	None
Hindgut	489 ± 11	4 of 4	4.00	Up
Heart	169 ± 15	4 of 4	1.38	None
Fat body	104 ± 18	4 of 4	0.84	None
Ovary	288 ± 5	4 of 4	2.30	Up
Testis	34 ± 3	4 of 4	0.30	Down
Male accessory glands	757 ± 34	4 of 4	6.10	Up
Virgin spermatheca	164 ± 23	4 of 4	1.33	None
Mated spermatheca	138 ± 8	4 of 4	1.12	None
Adult carcass	124 ± 8	4 of 4	1.00	None
Larval CNS	309 ± 18	4 of 4	2.50	Up
Larval Salivary gland	100 ± 10	4 of 4	0.82	None
Larval midgut	96 ± 4	4 of 4	0.78	Down
Larval tubule	195 ± 10	4 of 4	1.60	Up
Larval hindgut	474 ± 37	4 of 4	3.85	Up
Larval fat body	272 ± 38	4 of 4	2.20	Up
Larval trachea	72 ± 10	4 of 4	0.59	Down
Larval carcass	135 ± 16	4 of 4	1.10	None
S2 cells (growing)	201 ± 6	4 of 4	1.63	Up
Whole fly	123 ± 8	4 of 4

Looking for FBgn0036684. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720