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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036685 through 18771 annotations produced 1 hits



(CG6664):

Annotation Number : CG6664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036685
Gbrowse : chr3L:17006173-17009280 (-) // 100.0 //
Probeset : 1640659_s_at
Accessions : protein= NP_648944; /// NP_730232; /// NP_730233; /// NP_730234;, nucleotide= NM_140687; /// NM_168709; /// NM_168710; /// NM_168711;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036685.
BioGrid reports that CG6664 interacts with CG8678 .
VDRC has 3 RNAi stocks for FBgn0036685 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 ± 14 of 4 1.10None
Head109 ± 64 of 4 0.70Down
Eye94 ± 44 of 4 0.57Down
Thoracicoabdominal ganglion210 ± 54 of 4 1.30Up
Salivary gland109 ± 104 of 4 0.66Down
Crop149 ± 34 of 4 0.90None
Midgut88 ± 24 of 4 0.50Down
Tubule73 ± 04 of 4 0.40Down
Hindgut106 ± 24 of 4 0.60Down
Heart115 ± 24 of 4 0.70Down
Fat body141 ± 64 of 4 0.86None
Ovary216 ± 54 of 4 1.30Up
Testis422 ± 114 of 4 2.50Up
Male accessory glands150 ± 104 of 4 0.90None
Virgin spermatheca93 ± 24 of 4 0.56Down
Mated spermatheca102 ± 24 of 4 0.61Down
Adult carcass167 ± 84 of 4 1.00None
Larval CNS261 ± 124 of 4 1.58Up
Larval Salivary gland203 ± 44 of 4 1.23Up
Larval midgut143 ± 114 of 4 0.86None
Larval tubule173 ± 44 of 4 1.00None
Larval hindgut170 ± 54 of 4 1.03None
Larval fat body222 ± 184 of 4 1.30Up
Larval trachea168 ± 44 of 4 1.02None
Larval carcass357 ± 474 of 4 2.16Up
S2 cells (growing)159 ± 14 of 4 0.96None
Whole fly165 ± 84 of 4

Looking for FBgn0036685. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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