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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036686 through 18771 annotations produced 1 hits



(CG7728):

Annotation Number : CG7728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036686
Gbrowse : chr3L:17009653-17013370 (+) // 100.0 //
Probeset : 1633466_at
Accessions : protein= NP_648945;, nucleotide= NM_140688;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0036686.
VDRC has 2 RNAi stocks for FBgn0036686 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 30 of 4 0.40Down
Head43 40 of 4 0.50Down
Eye40 21 of 4 0.47Down
Thoracicoabdominal ganglion37 20 of 4 0.40Down
Salivary gland77 90 of 4 0.91None
Crop51 22 of 4 0.60Down
Midgut39 30 of 4 0.50Down
Tubule41 30 of 4 0.50Down
Hindgut49 30 of 4 0.60Down
Heart41 31 of 4 0.48Down
Fat body51 30 of 4 0.61Down
Ovary176 64 of 4 2.10Up
Testis21 10 of 4 0.30Down
Male accessory glands125 114 of 4 1.50Up
Virgin spermatheca54 50 of 4 0.64Down
Mated spermatheca67 50 of 4 0.80Down
Adult carcass52 30 of 4 0.60Down
Larval CNS88 44 of 4 1.04None
Larval Salivary gland106 24 of 4 1.26Up
Larval midgut43 20 of 4 0.51Down
Larval tubule15 40 of 4 0.20Down
Larval hindgut54 23 of 4 0.64Down
Larval fat body36 50 of 4 0.40Down
Larval trachea117 174 of 4 1.39Up
Larval carcass85 133 of 4 1.00None
S2 cells (growing)112 24 of 4 1.33Up
Whole fly84 44 of 4

Looking for FBgn0036686. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime