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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036688 through 18771 annotations produced 1 hits



Fermitin 2 (Fit2):

Annotation Number : CG7729
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036688
Gbrowse : chr3L:17017429-17020219 (+) // 100.0 //
Probeset : 1629441_at
Accessions : protein= NP_648947;, nucleotide= NM_140690;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0036688.
Homophila reports that CG7729 is a close match (8e-119) to human gene C20orf42;KIND1;URP1 (NP_060141), a gene associated with Kindler syndrome, 173650 (3).
BioGrid reports that CG7729 interacts with CG9705 .
TRiP has 2 RNAi stocks for FBgn0036688 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.20Down
Head26 ± 11 of 4 0.30Down
Eye45 ± 24 of 4 0.54Down
Thoracicoabdominal ganglion22 ± 33 of 4 0.30Down
Salivary gland18 ± 30 of 4 0.22Down
Crop79 ± 64 of 4 0.90None
Midgut18 ± 21 of 4 0.20Down
Tubule18 ± 12 of 4 0.20Down
Hindgut45 ± 24 of 4 0.50Down
Heart37 ± 74 of 4 0.45Down
Fat body16 ± 20 of 4 0.20Down
Ovary174 ± 94 of 4 2.10Up
Testis25 ± 04 of 4 0.30Down
Male accessory glands49 ± 24 of 4 0.60Down
Virgin spermatheca11 ± 00 of 4 0.14Down
Mated spermatheca20 ± 00 of 4 0.25Down
Adult carcass47 ± 30 of 4 0.60Down
Larval CNS33 ± 34 of 4 0.39Down
Larval Salivary gland29 ± 33 of 4 0.35Down
Larval midgut22 ± 23 of 4 0.26Down
Larval tubule10 ± 10 of 4 0.10Down
Larval hindgut68 ± 64 of 4 0.82None
Larval fat body11 ± 41 of 4 0.10Down
Larval trachea63 ± 64 of 4 0.75Down
Larval carcass150 ± 84 of 4 1.78Up
S2 cells (growing)44 ± 24 of 4 0.53Down
Whole fly84 ± 34 of 4

Looking for FBgn0036688. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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