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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036691 through 18771 annotations produced 1 hits



bad egg (beg):

Annotation Number : CG7842
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036691
Gbrowse : chr3L:17028783-17029960 (+) // 100.0 //
Probeset : 1641256_at
Accessions : protein= NP_648950;, nucleotide= NM_140693;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred fro
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004314 // [acyl-carrier-protein] S-malonyltran
FlyMine data for FBgn0036691.
VDRC has 3 RNAi stocks for FBgn0036691 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 ± 44 of 4 0.70Down
Head70 ± 34 of 4 0.70Down
Eye45 ± 34 of 4 0.47Down
Thoracicoabdominal ganglion89 ± 34 of 4 0.90None
Salivary gland90 ± 34 of 4 0.92None
Crop67 ± 44 of 4 0.70Down
Midgut88 ± 74 of 4 0.90None
Tubule72 ± 34 of 4 0.70Down
Hindgut84 ± 34 of 4 0.90Down
Heart75 ± 34 of 4 0.77Down
Fat body62 ± 44 of 4 0.63Down
Ovary163 ± 54 of 4 1.70Up
Testis33 ± 14 of 4 0.30Down
Male accessory glands69 ± 34 of 4 0.70Down
Virgin spermatheca57 ± 24 of 4 0.59Down
Mated spermatheca45 ± 44 of 4 0.46Down
Adult carcass72 ± 54 of 4 0.70Down
Larval CNS115 ± 84 of 4 1.17Up
Larval Salivary gland116 ± 114 of 4 1.18None
Larval midgut69 ± 34 of 4 0.70Down
Larval tubule69 ± 24 of 4 0.70Down
Larval hindgut127 ± 54 of 4 1.29Up
Larval fat body52 ± 54 of 4 0.50Down
Larval trachea89 ± 54 of 4 0.91None
Larval carcass81 ± 54 of 4 0.83None
S2 cells (growing)117 ± 44 of 4 1.19Up
Whole fly98 ± 34 of 4

Looking for FBgn0036691. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime