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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036695 through 18771 annotations produced 1 hits



PAPS transporter 2 (Papst2):

Annotation Number : CG7853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036695
Gbrowse : chr3L:17035901-17037572 (+) // 100.0 //
Probeset : 1628634_at
Accessions : protein= NP_648954;, nucleotide= NM_140697;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct
Interpro : 0046964 // 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity // inferred from direct assay
FlyMine data for FBgn0036695.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 24 of 4 1.90Up
Head88 74 of 4 1.10None
Eye87 54 of 4 1.13None
Thoracicoabdominal ganglion126 54 of 4 1.60Up
Salivary gland194 134 of 4 2.50Up
Crop81 44 of 4 1.00None
Midgut93 24 of 4 1.20None
Tubule118 54 of 4 1.50Up
Hindgut85 34 of 4 1.10None
Heart112 44 of 4 1.45Up
Fat body87 134 of 4 1.12None
Ovary121 34 of 4 1.60Up
Testis32 34 of 4 0.40Down
Male accessory glands316 114 of 4 4.10Up
Virgin spermatheca81 44 of 4 1.05None
Mated spermatheca89 64 of 4 1.15None
Adult carcass91 34 of 4 1.20None
Larval CNS87 74 of 4 1.12None
Larval Salivary gland534 734 of 4 6.88Up
Larval midgut89 44 of 4 1.15None
Larval tubule127 44 of 4 1.60Up
Larval hindgut66 14 of 4 0.85None
Larval fat body110 94 of 4 1.40Up
Larval trachea62 74 of 4 0.81None
Larval carcass53 34 of 4 0.69Down
S2 cells (growing)178 44 of 4 2.29Up
Whole fly77 54 of 4

Looking for FBgn0036695. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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