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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036696 through 18771 annotations produced 1 hits



(CG14057):

Annotation Number : CG14057
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036696
Gbrowse : chr3L:17037579-17038125 (-) // 100.0 //
Probeset : 1633054_at
Accessions : protein= NP_001163458; /// NP_648955;, nucleotide= NM_001169987; /// NM_140698;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004526 // ribonuclease P activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // inferr
FlyMine data for FBgn0036696.
VDRC has 4 RNAi stocks for FBgn0036696 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 44 of 4 0.30Down
Head57 14 of 4 0.30Down
Eye46 24 of 4 0.25Down
Thoracicoabdominal ganglion72 44 of 4 0.40Down
Salivary gland203 94 of 4 1.10None
Crop99 44 of 4 0.50Down
Midgut42 24 of 4 0.20Down
Tubule70 14 of 4 0.40Down
Hindgut68 44 of 4 0.40Down
Heart64 54 of 4 0.35Down
Fat body62 64 of 4 0.34Down
Ovary325 104 of 4 1.80Up
Testis36 24 of 4 0.20Down
Male accessory glands107 74 of 4 0.60Down
Virgin spermatheca23 04 of 4 0.13Down
Mated spermatheca36 24 of 4 0.20Down
Adult carcass48 34 of 4 0.30Down
Larval CNS166 134 of 4 0.90None
Larval Salivary gland199 134 of 4 1.07None
Larval midgut52 22 of 4 0.28Down
Larval tubule108 64 of 4 0.60Down
Larval hindgut121 114 of 4 0.65Down
Larval fat body49 54 of 4 0.30Down
Larval trachea222 274 of 4 1.20None
Larval carcass99 44 of 4 0.54Down
S2 cells (growing)224 44 of 4 1.21None
Whole fly185 144 of 4

Looking for FBgn0036696. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime