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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036697 through 18771 annotations produced 1 hits



rogdi (rogdi):

Annotation Number : CG7725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036697
Gbrowse : chr3L:17042615-17048556 (+) // 100.0 //
Probeset : 1624649_a_at
Accessions : protein= NP_648956; /// NP_730244;, nucleotide= NM_140699; /// NM_168717;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036697.
BDGP gene expression has embryonic in situ data for CG7725: 11 pix of staining in 3 body parts.
BioGrid reports that CG7725 interacts with CG8472 .
VDRC has 3 RNAi stocks for FBgn0036697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain380 94 of 4 1.70Up
Head343 204 of 4 1.60Up
Eye559 154 of 4 2.53Up
Thoracicoabdominal ganglion569 114 of 4 2.60Up
Salivary gland93 64 of 4 0.42Down
Crop109 24 of 4 0.50Down
Midgut429 224 of 4 1.90Up
Tubule135 124 of 4 0.60Down
Hindgut126 64 of 4 0.60Down
Heart403 134 of 4 1.83Up
Fat body521 584 of 4 2.36Up
Ovary349 34 of 4 1.60Up
Testis27 04 of 4 0.10Down
Male accessory glands73 34 of 4 0.30Down
Virgin spermatheca1269 564 of 4 5.75Up
Mated spermatheca884 584 of 4 4.01Up
Adult carcass298 134 of 4 1.40Up
Larval CNS328 214 of 4 1.49Up
Larval Salivary gland1182 994 of 4 5.36Up
Larval midgut683 624 of 4 3.10Up
Larval tubule151 74 of 4 0.70Down
Larval hindgut567 244 of 4 2.57Up
Larval fat body258 244 of 4 1.20None
Larval trachea181 234 of 4 0.82Down
Larval carcass139 114 of 4 0.63Down
S2 cells (growing)371 104 of 4 1.68Up
Whole fly220 74 of 4

Looking for FBgn0036697. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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