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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036698 through 18771 annotations produced 1 hits



chr3L:17048717-17051633 (+) // 100.0 // ():

Annotation Number : CG7724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630999_at
Accessions : protein= , nucleotide= NP_648957;
Pathway : 0006694 // steroid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // infer
FlyMine data for full length.
Homophila reports that CG7724 is a close match (1e-14) to human gene HSD3B7;PFIC4 (NP_079469), a gene associated with Cholestasis, progressive familial intrahepatic 4, 607765 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 0.20Down
Head264 214 of 4 4.80Up
Eye110 84 of 4 2.00Up
Thoracicoabdominal ganglion10 13 of 4 0.20Down
Salivary gland377 104 of 4 6.85Up
Crop317 174 of 4 5.80Up
Midgut28 24 of 4 0.50Down
Tubule212 304 of 4 3.90Up
Hindgut93 34 of 4 1.70Up
Heart19 23 of 4 0.35Down
Fat body20 53 of 4 0.38Down
Ovary5 10 of 4 0.10Down
Testis11 14 of 4 0.20Down
Male accessory glands16 11 of 4 0.30Down
Virgin spermatheca17 20 of 4 0.31Down
Mated spermatheca16 11 of 4 0.30Down
Adult carcass197 134 of 4 3.60Up
Larval CNS8 02 of 4 0.15Down
Larval Salivary gland21 34 of 4 0.40Down
Larval midgut23 14 of 4 0.43Down
Larval tubule93 64 of 4 1.70Up
Larval hindgut74 34 of 4 1.36Up
Larval fat body12 20 of 4 0.20Down
Larval trachea67 94 of 4 1.22None
Larval carcass70 54 of 4 1.28None
S2 cells (growing)12 13 of 4 0.23Down
Whole fly55 34 of 4

Looking for FBgn0036698. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime