FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036702 through 18771 annotations produced 1 hits

(CG6512):

Annotation Number : CG6512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036702
Gbrowse : chr3L:17231716-17235223 (-) // 100.0 //
Probeset : 1634899_a_at
Accessions : protein= NP_730248; /// NP_730250;, nucleotide= NM_168720; /// NM_168722;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // infe
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // in
FlyMine data for FBgn0036702.
BDGP gene expression has embryonic in situ data for CG6512: 10 pix of staining in 20 body parts.
Homophila reports that CG6512 is a close match (8e-11) to human gene BCS1L;BJS;FLNMS;GRACILE;PTD (NP_004319), a gene associated with Bjornstad syndrome, 262000 (3);GRACILE syndrome, 603358 (3);Leigh syndrome, 256000 (3);Mitochondrial complex III deficiency, 124000 (3).
TRiP has 1 RNAi stocks for FBgn0036702 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036702 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	498 ± 11	4 of 4	1.40	Up
Head	311 ± 17	4 of 4	0.90	None
Eye	315 ± 30	4 of 4	0.89	None
Thoracicoabdominal ganglion	612 ± 11	4 of 4	1.70	Up
Salivary gland	399 ± 12	4 of 4	1.13	Up
Crop	349 ± 3	4 of 4	1.00	None
Midgut	477 ± 10	4 of 4	1.30	Up
Tubule	743 ± 72	4 of 4	2.10	Up
Hindgut	386 ± 4	4 of 4	1.10	Up
Heart	299 ± 14	4 of 4	0.85	Down
Fat body	372 ± 40	4 of 4	1.05	None
Ovary	341 ± 7	4 of 4	1.00	None
Testis	796 ± 19	4 of 4	2.30	Up
Male accessory glands	315 ± 6	4 of 4	0.90	Down
Virgin spermatheca	323 ± 13	4 of 4	0.92	None
Mated spermatheca	349 ± 19	4 of 4	0.99	None
Adult carcass	626 ± 12	4 of 4	1.80	Up
Larval CNS	346 ± 12	4 of 4	0.98	None
Larval Salivary gland	452 ± 15	4 of 4	1.28	Up
Larval midgut	438 ± 10	4 of 4	1.24	Up
Larval tubule	387 ± 22	4 of 4	1.10	None
Larval hindgut	542 ± 18	4 of 4	1.53	Up
Larval fat body	217 ± 14	4 of 4	0.60	Down
Larval trachea	276 ± 26	4 of 4	0.78	Down
Larval carcass	520 ± 24	4 of 4	1.47	Up
S2 cells (growing)	658 ± 7	4 of 4	1.86	Up
Whole fly	353 ± 9	4 of 4

Looking for FBgn0036702. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720