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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036704 through 18771 annotations produced 1 hits



(CG6497):

Annotation Number : CG6497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036704
Gbrowse : chr3L:17245826-17247103 (-) // 100.0 //
Probeset : 1636084_at
Accessions : protein= NP_648963;, nucleotide= NM_140706;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036704.
BDGP gene expression has embryonic in situ data for CG6497: 2 pix of staining in 1 body parts.
BioGrid reports that CG6497 interacts with CG6719 CG7048 .
TRiP has 1 RNAi stocks for FBgn0036704 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion4 10 of 4 0.20Down
Salivary gland15 40 of 4 0.50Down
Crop4 10 of 4 0.10Down
Midgut15 10 of 4 0.50Down
Tubule5 10 of 4 0.20Down
Hindgut6 20 of 4 0.20Down
Heart1 00 of 4 0.03Down
Fat body6 20 of 4 0.20Down
Ovary2 00 of 4 0.10Down
Testis591 174 of 418.90Up
Male accessory glands8 20 of 4 0.30Down
Virgin spermatheca5 10 of 4 0.17Down
Mated spermatheca4 10 of 4 0.15Down
Adult carcass3 10 of 4 0.10Down
Larval CNS3 20 of 4 0.11Down
Larval Salivary gland10 10 of 4 0.32Down
Larval midgut10 10 of 4 0.33Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut4 20 of 4 0.13Down
Larval fat body37 212 of 4 1.20None
Larval trachea5 10 of 4 0.16Down
Larval carcass3 10 of 4 0.10Down
S2 cells (growing)3 10 of 4 0.11Down
Whole fly31 04 of 4

Looking for FBgn0036704. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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