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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036705 through 18771 annotations produced 1 hits


Annotation Number : CG13723
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036705
Gbrowse : chr3L:17257599-17257932 (+) // 100.0 //
Probeset : 1629661_at
Accessions : protein= NP_648964;, nucleotide= NM_140707;
FlyMine data for FBgn0036705.
VDRC has 2 RNAi stocks for FBgn0036705 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head2 00 of 4 0.10Down
Eye4 00 of 4 0.14Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland6 40 of 4 0.21Down
Crop3 00 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart2 11 of 4 0.09Down
Fat body3 10 of 4 0.13Down
Ovary0 00 of 4 0.00Down
Testis425 214 of 414.50Up
Male accessory glands10 20 of 4 0.30Down
Virgin spermatheca2 00 of 4 0.08Down
Mated spermatheca3 00 of 4 0.12Down
Adult carcass10 20 of 4 0.30Down
Larval CNS1 10 of 4 0.06Down
Larval Salivary gland3 10 of 4 0.12Down
Larval midgut5 10 of 4 0.19Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 10 of 4 0.11Down
Larval fat body35 144 of 4 1.20None
Larval trachea2 20 of 4 0.08Down
Larval carcass3 00 of 4 0.13Down
S2 cells (growing)2 10 of 4 0.08Down
Whole fly29 24 of 4

Looking for FBgn0036705. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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