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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036706 through 18771 annotations produced 1 hits


NADH:ubiquinone oxidoreductase 24 kDa subunit (CG6485):

Annotation Number : CG6485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036706
Gbrowse : chr3L:17313061-17313911 (-) // 100.0 //
Probeset : 1633906_at
Accessions : protein= NP_648965;, nucleotide= NM_140708;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0036706.
BDGP gene expression has embryonic in situ data for CG6485: 2 pix of staining in 1 body parts.
Homophila reports that CG6485 is a close match (3e-55) to human gene NDUFV2 (NP_066552), a gene associated with {Parkinson disease, susceptibility to}, 168600 (3).
VDRC has 3 RNAi stocks for FBgn0036706 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland6 ± 20 of 4 0.13Down
Crop3 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.00Down
Heart3 ± 00 of 4 0.07Down
Fat body1 ± 00 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis563 ± 264 of 412.10Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca2 ± 00 of 4 0.04Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut3 ± 20 of 4 0.08Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body58 ± 311 of 4 1.20None
Larval trachea3 ± 30 of 4 0.07Down
Larval carcass4 ± 10 of 4 0.09Down
S2 cells (growing)2 ± 10 of 4 0.06Down
Whole fly46 ± 24 of 4

Looking for FBgn0036706. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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