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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036708 through 18771 annotations produced 1 hits



(CG13725):

Annotation Number : CG13725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036708
Gbrowse : chr3L:17317924-17318556 (-) // 100.0 //
Probeset : 1641472_at
Accessions : protein= NP_648967;, nucleotide= NM_140710;
Interpro : "0005524 // ATP binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electr
FlyMine data for FBgn0036708.
VDRC has 3 RNAi stocks for FBgn0036708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye3 10 of 4 0.03Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland6 20 of 4 0.07Down
Crop1 00 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body3 30 of 4 0.03Down
Ovary2 00 of 4 0.00Down
Testis953 394 of 410.20Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca5 10 of 4 0.06Down
Mated spermatheca5 00 of 4 0.06Down
Adult carcass1 00 of 4 0.00Down
Larval CNS3 20 of 4 0.03Down
Larval Salivary gland5 10 of 4 0.06Down
Larval midgut7 10 of 4 0.07Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.03Down
Larval fat body92 503 of 4 1.00None
Larval trachea6 61 of 4 0.07Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)2 00 of 4 0.02Down
Whole fly93 44 of 4

Looking for FBgn0036708. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime