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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036711 through 18771 annotations produced 1 hits



(CG13727):

Annotation Number : CG13727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036711
Gbrowse : chr3L:17333378-17334416 (-) // 100.0 //
Probeset : 1633972_at
Accessions : protein= NP_648969;, nucleotide= NM_140712;
FlyMine data for FBgn0036711.
VDRC has 1 RNAi stocks for FBgn0036711 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.10None
Head3 ± 10 of 4 3.70None
Eye1 ± 00 of 4 1.85None
Thoracicoabdominal ganglion1 ± 00 of 4 1.10None
Salivary gland3 ± 00 of 4 3.79None
Crop1 ± 00 of 4 1.60None
Midgut0 ± 00 of 4 0.80None
Tubule1 ± 00 of 4 1.00None
Hindgut0 ± 00 of 4 0.90None
Heart0 ± 00 of 4 0.72None
Fat body1 ± 00 of 4 1.38None
Ovary0 ± 00 of 4 0.60None
Testis0 ± 00 of 4 0.80None
Male accessory glands1 ± 00 of 4 1.40None
Virgin spermatheca1 ± 00 of 4 1.08None
Mated spermatheca1 ± 00 of 4 1.49None
Adult carcass3 ± 10 of 4 3.90None
Larval CNS0 ± 00 of 4 0.90None
Larval Salivary gland0 ± 00 of 4 0.92None
Larval midgut0 ± 00 of 4 0.85None
Larval tubule1 ± 00 of 4 1.10None
Larval hindgut1 ± 00 of 4 1.00None
Larval fat body2 ± 10 of 4 3.00None
Larval trachea0 ± 00 of 4 0.90None
Larval carcass2 ± 10 of 4 3.00None
S2 cells (growing)0 ± 00 of 4 0.72None
Whole fly1 ± 00 of 4

Looking for FBgn0036711. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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