FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036712 through 18771 annotations produced 1 hits

(CG16793):

Annotation Number : CG16793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036712
Gbrowse : chr3L:17335150-17337796 (-) // 100.0 //
Probeset : 1637719_at
Accessions : protein= NP_648970;, nucleotide= NM_140713;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005262 // calcium channel activity // inferred from sequence or structural similarity /// 0005509 // calcium ion bindin
FlyMine data for FBgn0036712.
BDGP gene expression has embryonic in situ data for CG16793: 9 pix of staining in 5 body parts.
Homophila reports that CG16793 is a close match (9e-12) to human gene PKD2;PKD4 (NP_000288), a gene associated with Polycystic kidney disease, adult, type II (3).
TRiP has 2 RNAi stocks for FBgn0036712 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.80	None
Head	1 ± 0	0 of 4	0.30	None
Eye	2 ± 1	1 of 4	0.57	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.40	None
Salivary gland	7 ± 4	0 of 4	1.72	None
Crop	3 ± 1	0 of 4	0.70	None
Midgut	4 ± 1	0 of 4	0.90	None
Tubule	2 ± 0	0 of 4	0.60	Down
Hindgut	3 ± 0	0 of 4	0.80	None
Heart	2 ± 1	0 of 4	0.43	None
Fat body	6 ± 6	0 of 4	1.43	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	62 ± 6	4 of 4	13.60	Up
Male accessory glands	4 ± 2	0 of 4	1.00	None
Virgin spermatheca	5 ± 2	0 of 4	1.24	None
Mated spermatheca	6 ± 1	0 of 4	1.40	None
Adult carcass	7 ± 0	0 of 4	1.70	None
Larval CNS	3 ± 1	0 of 4	0.70	None
Larval Salivary gland	11 ± 2	1 of 4	2.44	None
Larval midgut	3 ± 1	0 of 4	0.85	None
Larval tubule	3 ± 1	0 of 4	0.80	None
Larval hindgut	4 ± 0	0 of 4	1.02	None
Larval fat body	11 ± 1	1 of 4	2.50	Up
Larval trachea	5 ± 1	0 of 4	1.12	None
Larval carcass	3 ± 1	0 of 4	0.79	None
S2 cells (growing)	5 ± 0	0 of 4	1.12	None
Whole fly	4 ± 1	1 of 4

Looking for FBgn0036712. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720