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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036715 through 18771 annotations produced 1 hits



Cad74A (Cad74A):

Annotation Number : CG6445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036715
Gbrowse : chr3L:17360850-17372629 (-) // 100.0 //
Probeset : 1635742_s_at
Accessions : protein= NP_648973; /// NP_730261;, nucleotide= NM_140716; /// NM_168724;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0036715.
BDGP gene expression has embryonic in situ data for Cad74A: 27 pix of staining in 20 body parts.
Homophila reports that CG6445 is a close match (4e-11) to human gene DSG1 (NP_001933), a gene associated with Keratosis palmoplantaris striata I, 148700 (3).
TRiP has 1 RNAi stocks for FBgn0036715 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036715 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head19 14 of 4 0.30Down
Eye41 24 of 4 0.55None
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland10 30 of 4 0.14Down
Crop56 34 of 4 0.80None
Midgut7 10 of 4 0.10Down
Tubule4 10 of 4 0.10Down
Hindgut11 11 of 4 0.20Down
Heart5 21 of 4 0.07Down
Fat body11 30 of 4 0.15Down
Ovary155 144 of 4 2.10Up
Testis4 10 of 4 0.10Down
Male accessory glands162 64 of 4 2.20Up
Virgin spermatheca5 10 of 4 0.07Down
Mated spermatheca7 20 of 4 0.11Down
Adult carcass12 00 of 4 0.20Down
Larval CNS54 104 of 4 0.74None
Larval Salivary gland12 13 of 4 0.17Down
Larval midgut13 14 of 4 0.18Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut174 94 of 4 2.36Up
Larval fat body1 00 of 4 0.00Down
Larval trachea272 204 of 4 3.68Up
Larval carcass182 134 of 4 2.46Up
S2 cells (growing)3 10 of 4 0.04Down
Whole fly74 144 of 4

Looking for FBgn0036715. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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