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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036716 through 18771 annotations produced 1 hits



(CG13728):

Annotation Number : CG13728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036716
Gbrowse : chr3L:17373123-17375785 (-) // 100.0 //
Probeset : 1630069_at
Accessions : protein= NP_648974;, nucleotide= NM_140717;
FlyMine data for FBgn0036716.
BDGP gene expression has embryonic in situ data for CG13728: 4 pix of staining in 1 body parts.
BioGrid reports that CG13728 interacts with CG17777 .
VDRC has 2 RNAi stocks for FBgn0036716 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40None
Head3 ± 10 of 4 0.50None
Eye2 ± 20 of 4 0.37None
Thoracicoabdominal ganglion3 ± 10 of 4 0.40None
Salivary gland9 ± 20 of 4 1.16None
Crop4 ± 10 of 4 0.60None
Midgut9 ± 10 of 4 1.20None
Tubule3 ± 00 of 4 0.50Down
Hindgut20 ± 43 of 4 2.70None
Heart1 ± 00 of 4 0.16Down
Fat body6 ± 40 of 4 0.81None
Ovary2 ± 00 of 4 0.30None
Testis9 ± 12 of 4 1.20None
Male accessory glands4 ± 10 of 4 0.60None
Virgin spermatheca44 ± 183 of 4 5.72None
Mated spermatheca67 ± 164 of 4 8.64Up
Adult carcass2 ± 10 of 4 0.30None
Larval CNS3 ± 10 of 4 0.43None
Larval Salivary gland2 ± 10 of 4 0.36None
Larval midgut4 ± 10 of 4 0.64None
Larval tubule7 ± 10 of 4 1.00None
Larval hindgut2 ± 10 of 4 0.31None
Larval fat body7 ± 20 of 4 1.00None
Larval trachea3 ± 30 of 4 0.40None
Larval carcass6 ± 01 of 4 0.82None
S2 cells (growing)5 ± 00 of 4 0.74None
Whole fly7 ± 12 of 4

Looking for FBgn0036716. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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