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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036726 through 18771 annotations produced 1 hits



(CG7603):

Annotation Number : CG7603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036726
Gbrowse : chr3L:17459048-17459871 (+) // 100.0 //
Probeset : 1628208_at
Accessions : protein= NP_648983;, nucleotide= NM_140726;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036726.
TRiP has 1 RNAi stocks for FBgn0036726 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain685 ± 164 of 4 1.00None
Head903 ± 234 of 4 1.30Up
Eye1052 ± 264 of 4 1.57Up
Thoracicoabdominal ganglion1051 ± 314 of 4 1.60Up
Salivary gland1131 ± 294 of 4 1.69Up
Crop1152 ± 224 of 4 1.70Up
Midgut501 ± 84 of 4 0.70Down
Tubule392 ± 144 of 4 0.60Down
Hindgut1402 ± 324 of 4 2.10Up
Heart1109 ± 474 of 4 1.66Up
Fat body781 ± 774 of 4 1.17None
Ovary536 ± 84 of 4 0.80None
Testis146 ± 24 of 4 0.20Down
Male accessory glands602 ± 194 of 4 0.90None
Virgin spermatheca837 ± 184 of 4 1.25Up
Mated spermatheca815 ± 294 of 4 1.22Up
Adult carcass1602 ± 814 of 4 2.40Up
Larval CNS410 ± 134 of 4 0.61Down
Larval Salivary gland551 ± 154 of 4 0.82None
Larval midgut585 ± 194 of 4 0.87None
Larval tubule532 ± 434 of 4 0.80None
Larval hindgut928 ± 394 of 4 1.39Up
Larval fat body444 ± 354 of 4 0.70Down
Larval trachea528 ± 294 of 4 0.79Down
Larval carcass896 ± 704 of 4 1.34Up
S2 cells (growing)347 ± 44 of 4 0.52Down
Whole fly670 ± 454 of 4

Looking for FBgn0036726. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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