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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036727 through 18771 annotations produced 1 hits



(CG7589):

Annotation Number : CG7589
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036727
Gbrowse : chr3L:17463806-17467478 (+) // 100.0 //
Probeset : 1624670_at
Accessions : protein= NP_648984;, nucleotide= NM_140727;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for FBgn0036727.
Homophila reports that CG7589 is a close match (4e-23) to human gene CAE2;ECA2;GABRG2;GEFSP3 (NP_944493), a gene associated with Epilepsy, childhood absence, 2, 607681 (3);Epilepsy, generalized, with febrile seizures plus, type 3, 604233 (3);Febrile convulsions, familial, 8, 611277 (3);Myoclonic epilepsy, severe, of infancy, 607208 (3).
TRiP has 1 RNAi stocks for FBgn0036727 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036727 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head38 ± 13 of 4 0.90None
Eye81 ± 44 of 4 1.83Up
Thoracicoabdominal ganglion10 ± 40 of 4 0.20Down
Salivary gland5333 ± 1324 of 4120.38Up
Crop30 ± 23 of 4 0.70None
Midgut113 ± 34 of 4 2.60Up
Tubule657 ± 654 of 414.80Up
Hindgut3 ± 00 of 4 0.10Down
Heart6 ± 20 of 4 0.15Down
Fat body9 ± 61 of 4 0.21Down
Ovary2 ± 00 of 4 0.00Down
Testis14 ± 03 of 4 0.30Down
Male accessory glands35 ± 33 of 4 0.80None
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.05Down
Adult carcass58 ± 44 of 4 1.30None
Larval CNS3 ± 10 of 4 0.08Down
Larval Salivary gland145 ± 64 of 4 3.28Up
Larval midgut268 ± 44 of 4 6.05Up
Larval tubule488 ± 284 of 411.00Up
Larval hindgut18 ± 10 of 4 0.42Down
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea3 ± 30 of 4 0.09Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.05Down
Whole fly44 ± 54 of 4

Looking for FBgn0036727. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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