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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036728 through 18771 annotations produced 1 hits



ubiquinone binding protein (CG7580):

Annotation Number : CG7580
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036728
Gbrowse : chr3L:17467860-17468946 (+) // 100.0 //
Probeset : 1640948_at
Accessions : protein= NP_648985;, nucleotide= NM_140728;
Pathway : ubiquinol to cytochrome c // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // infe
Interpro : 0005750 // mitochondrial respiratory chain complex III // inferred from sequence or structural similarity /// 0005811 //
FlyMine data for FBgn0036728.
Homophila reports that CG7580 is a close match (1e-16) to human gene QPC;UQCRQ (NP_055217), a gene associated with Mitochondrial complex III deficiency, 124000 (3).
BioGrid reports that CG7580 interacts with CG8316 .
VDRC has 3 RNAi stocks for FBgn0036728 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 ± 124 of 4 0.40Down
Head314 ± 124 of 4 0.70Down
Eye352 ± 274 of 4 0.76Down
Thoracicoabdominal ganglion321 ± 44 of 4 0.70Down
Salivary gland485 ± 374 of 4 1.05None
Crop319 ± 184 of 4 0.70Down
Midgut229 ± 114 of 4 0.50Down
Tubule176 ± 54 of 4 0.40Down
Hindgut380 ± 124 of 4 0.80None
Heart747 ± 1024 of 4 1.62None
Fat body527 ± 564 of 4 1.14None
Ovary192 ± 74 of 4 0.40Down
Testis1034 ± 204 of 4 2.20Up
Male accessory glands305 ± 174 of 4 0.70Down
Virgin spermatheca216 ± 84 of 4 0.47Down
Mated spermatheca189 ± 64 of 4 0.41Down
Adult carcass565 ± 404 of 4 1.20None
Larval CNS198 ± 84 of 4 0.43Down
Larval Salivary gland326 ± 124 of 4 0.71Down
Larval midgut250 ± 94 of 4 0.54Down
Larval tubule207 ± 154 of 4 0.40Down
Larval hindgut422 ± 274 of 4 0.91None
Larval fat body243 ± 544 of 4 0.50Down
Larval trachea233 ± 104 of 4 0.50Down
Larval carcass371 ± 504 of 4 0.81None
S2 cells (growing)156 ± 54 of 4 0.34Down
Whole fly461 ± 294 of 4

Looking for FBgn0036728. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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