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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036731 through 18771 annotations produced 1 hits


(CG6333):

Annotation Number : CG6333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036731
Gbrowse : chr3L:17473344-17474038 (-) // 100.0 //
Probeset : 1628128_at
Accessions : protein= NP_001163459; /// NP_730277;, nucleotide= NM_001169988; /// NM_168734;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036731.
BioGrid reports that CG6333 interacts with CG7867 CG8361 CG9331 .
VDRC has 3 RNAi stocks for FBgn0036731 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head5 ± 10 of 4 0.10Down
Eye4 ± 11 of 4 0.09Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.03Down
Crop0 ± 00 of 4 0.00Down
Midgut8 ± 10 of 4 0.20Down
Tubule9 ± 00 of 4 0.20Down
Hindgut7 ± 20 of 4 0.10Down
Heart5 ± 11 of 4 0.10Down
Fat body10 ± 50 of 4 0.21Down
Ovary1 ± 00 of 4 0.00Down
Testis535 ± 184 of 410.30Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca11 ± 21 of 4 0.22Down
Mated spermatheca11 ± 11 of 4 0.22Down
Adult carcass8 ± 20 of 4 0.20Down
Larval CNS5 ± 00 of 4 0.10Down
Larval Salivary gland6 ± 20 of 4 0.13Down
Larval midgut4 ± 10 of 4 0.09Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.04Down
Larval fat body39 ± 182 of 4 0.80None
Larval trachea5 ± 51 of 4 0.11Down
Larval carcass4 ± 20 of 4 0.09Down
S2 cells (growing)4 ± 00 of 4 0.08Down
Whole fly51 ± 24 of 4

Looking for FBgn0036731. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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