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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036738 through 18771 annotations produced 1 hits


(CG7542):

Annotation Number : CG7542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036738
Gbrowse : chr3L:17542925-17543758 (+) // 100.0 //
Probeset : 1629476_at
Accessions : protein= NP_648995;, nucleotide= NM_140738;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036738.
BDGP gene expression has embryonic in situ data for CG7542: 2 pix of staining in 1 body parts.
Homophila reports that CG7542 is a close match (5e-13) to human gene F12;HAE3;HAF (NP_000496), a gene associated with Angioedema, hereditary, type III, 610618 (3);Factor XII deficiency, 234000 (3).
VDRC has 3 RNAi stocks for FBgn0036738 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye4 ± 30 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland6 ± 10 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut4779 ± 2384 of 4 7.50Up
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body1 ± 00 of 4 0.00Down
Ovary4 ± 10 of 4 0.00Down
Testis19 ± 34 of 4 0.00Down
Male accessory glands1 ± 10 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca1 ± 00 of 4 0.00Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut41 ± 64 of 4 0.07Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.00Down
Larval fat body4 ± 30 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly639 ± 544 of 4

Looking for FBgn0036738. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime