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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036741 through 18771 annotations produced 1 hits


Annotation Number : CG7510
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036741
Gbrowse : chr3L:17614925-17623589 (+) // 100.0 //
Probeset : 1626263_at
Accessions : protein= NP_648998;, nucleotide= NM_140741;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0036741.
BDGP gene expression has embryonic in situ data for CG7510: 13 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0036741 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain168 34 of 4 2.20Up
Head156 74 of 4 2.00Up
Eye186 94 of 4 2.41Up
Thoracicoabdominal ganglion178 54 of 4 2.30Up
Salivary gland1488 524 of 419.19Up
Crop715 194 of 4 9.20Up
Midgut81 24 of 4 1.00None
Tubule159 104 of 4 2.10Up
Hindgut153 94 of 4 2.00Up
Heart112 74 of 4 1.45Up
Fat body130 144 of 4 1.69Up
Ovary115 64 of 4 1.50Up
Testis21 34 of 4 0.30Down
Male accessory glands75 84 of 4 1.00None
Virgin spermatheca129 54 of 4 1.66Up
Mated spermatheca95 44 of 4 1.23Up
Adult carcass106 44 of 4 1.40Up
Larval CNS97 64 of 4 1.26Up
Larval Salivary gland40 64 of 4 0.52Down
Larval midgut140 94 of 4 1.81Up
Larval tubule113 94 of 4 1.50Up
Larval hindgut107 54 of 4 1.38Up
Larval fat body43 44 of 4 0.60Down
Larval trachea51 114 of 4 0.67Down
Larval carcass74 124 of 4 0.97None
S2 cells (growing)59 34 of 4 0.76Down
Whole fly77 54 of 4

Looking for FBgn0036741. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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