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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036749 through 18771 annotations produced 1 hits


Annotation Number : CG7460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036749
Gbrowse : chr3L:17733924-17735385 (+) // 100.0 //
Probeset : 1625149_at
Accessions : protein= NP_649004;, nucleotide= NM_140747;
FlyMine data for FBgn0036749.
VDRC has 3 RNAi stocks for FBgn0036749 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.30Down
Head11 23 of 4 0.60Down
Eye8 12 of 4 0.42Down
Thoracicoabdominal ganglion10 11 of 4 0.50Down
Salivary gland21 50 of 4 1.04None
Crop11 10 of 4 0.60Down
Midgut73 34 of 4 3.50Up
Tubule38 192 of 4 1.80None
Hindgut11 12 of 4 0.50Down
Heart10 14 of 4 0.48Down
Fat body33 144 of 4 1.61None
Ovary29 24 of 4 1.40Up
Testis10 14 of 4 0.50Down
Male accessory glands40 24 of 4 1.90Up
Virgin spermatheca11 11 of 4 0.57Down
Mated spermatheca19 33 of 4 0.92None
Adult carcass22 23 of 4 1.10None
Larval CNS4 10 of 4 0.23Down
Larval Salivary gland8 11 of 4 0.39Down
Larval midgut128 124 of 4 6.13Up
Larval tubule8 22 of 4 0.40Down
Larval hindgut12 23 of 4 0.58Down
Larval fat body24 24 of 4 1.10None
Larval trachea1 10 of 4 0.09Down
Larval carcass11 02 of 4 0.56Down
S2 cells (growing)21 24 of 4 1.02None
Whole fly21 14 of 4

Looking for FBgn0036749. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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