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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036763 through 18771 annotations produced 1 hits



/// CG7441 (CG7441 /// DsimGD14730):

Annotation Number : CG7441
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036763
Gbrowse : chr3L:17842794-17845554 (+) // 100.0 //
Probeset : 1628512_at
Accessions : protein= NP_649018;, nucleotide= NM_140761;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0036763.
VDRC has 2 RNAi stocks for FBgn0036763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 24 of 4 0.50Down
Head63 64 of 4 0.30Down
Eye53 34 of 4 0.28Down
Thoracicoabdominal ganglion145 34 of 4 0.80Down
Salivary gland62 14 of 4 0.33Down
Crop49 14 of 4 0.30Down
Midgut40 24 of 4 0.20Down
Tubule46 14 of 4 0.20Down
Hindgut53 24 of 4 0.30Down
Heart61 14 of 4 0.33Down
Fat body82 134 of 4 0.43Down
Ovary168 64 of 4 0.90None
Testis1478 704 of 4 7.80Up
Male accessory glands56 24 of 4 0.30Down
Virgin spermatheca40 44 of 4 0.21Down
Mated spermatheca41 44 of 4 0.22Down
Adult carcass62 84 of 4 0.30Down
Larval CNS98 34 of 4 0.52Down
Larval Salivary gland75 54 of 4 0.39Down
Larval midgut44 34 of 4 0.23Down
Larval tubule40 24 of 4 0.20Down
Larval hindgut66 64 of 4 0.35Down
Larval fat body174 864 of 4 0.90None
Larval trachea45 74 of 4 0.24Down
Larval carcass53 44 of 4 0.28Down
S2 cells (growing)89 24 of 4 0.47Down
Whole fly189 84 of 4

Looking for FBgn0036763. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime