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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036766 through 18771 annotations produced 1 hits



/// (CG5506 /// DsimCG5506):

Annotation Number : CG5506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036766
Gbrowse : chr3L:17876748-17877460 (-) // 100.0 //
Probeset : 1638991_at
Accessions : protein= NP_649021;, nucleotide= NM_140764;
FlyMine data for FBgn0036766.
VDRC has 2 RNAi stocks for FBgn0036766 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 0.00Down
Head58 ± 144 of 4 0.00Down
Eye13 ± 62 of 4 0.01Down
Thoracicoabdominal ganglion7 ± 11 of 4 0.00Down
Salivary gland37 ± 34 of 4 0.03Down
Crop62 ± 473 of 4 0.00Down
Midgut5950 ± 1304 of 4 4.30Up
Tubule139 ± 474 of 4 0.10Down
Hindgut1792 ± 404 of 4 1.30None
Heart7 ± 12 of 4 0.01Down
Fat body19 ± 54 of 4 0.01Down
Ovary4 ± 01 of 4 0.00Down
Testis4 ± 00 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca29 ± 24 of 4 0.02Down
Mated spermatheca30 ± 64 of 4 0.02Down
Adult carcass22 ± 63 of 4 0.00Down
Larval CNS17 ± 184 of 4 0.01Down
Larval Salivary gland5 ± 10 of 4 0.00Down
Larval midgut4923 ± 2834 of 4 3.56Up
Larval tubule62 ± 224 of 4 0.00Down
Larval hindgut849 ± 454 of 4 0.61None
Larval fat body6 ± 00 of 4 0.00Down
Larval trachea13 ± 53 of 4 0.01Down
Larval carcass13 ± 32 of 4 0.01Down
S2 cells (growing)6 ± 11 of 4 0.00Down
Whole fly1381 ± 1774 of 4

Looking for FBgn0036766. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime