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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036771 through 18771 annotations produced 1 hits



(CG14353):

Annotation Number : CG14353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036771
Gbrowse : chr3L:17901353-17902537 (+) // 100.0 //
Probeset : 1629820_at
Accessions : protein= NP_649025;, nucleotide= NM_140768;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036771.
BioGrid reports that CG14353 interacts with CG6544 .
VDRC has 2 RNAi stocks for FBgn0036771 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 34 of 4 1.60Up
Head48 14 of 4 0.80Down
Eye74 44 of 4 1.24Up
Thoracicoabdominal ganglion105 14 of 4 1.80Up
Salivary gland37 43 of 4 0.64Down
Crop27 14 of 4 0.50Down
Midgut22 34 of 4 0.40Down
Tubule28 14 of 4 0.50Down
Hindgut20 14 of 4 0.30Down
Heart24 14 of 4 0.41Down
Fat body15 42 of 4 0.26Down
Ovary58 24 of 4 1.00None
Testis375 104 of 4 6.30Up
Male accessory glands31 24 of 4 0.50Down
Virgin spermatheca28 34 of 4 0.48Down
Mated spermatheca34 14 of 4 0.58Down
Adult carcass24 13 of 4 0.40Down
Larval CNS75 34 of 4 1.26Up
Larval Salivary gland43 44 of 4 0.74Down
Larval midgut28 24 of 4 0.48Down
Larval tubule32 14 of 4 0.50Down
Larval hindgut25 14 of 4 0.43Down
Larval fat body74 244 of 4 1.30None
Larval trachea54 74 of 4 0.92None
Larval carcass31 34 of 4 0.53Down
S2 cells (growing)101 24 of 4 1.70Up
Whole fly59 14 of 4

Looking for FBgn0036771. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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