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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036773 through 18771 annotations produced 1 hits


Annotation Number : CG13698
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036773
Gbrowse : chr3L:18082215-18099230 (-) // 99.59 //
Probeset : 1622937_at
Accessions : protein= NP_649027;, nucleotide= NM_140770;
FlyMine data for FBgn0036773.
BDGP gene expression has embryonic in situ data for CG13698: 16 pix of staining in 11 body parts.
BioGrid reports that CG13698 interacts with CG4059 .
VDRC has 2 RNAi stocks for FBgn0036773 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 24 of 4 1.30Up
Head98 84 of 4 1.60Up
Eye168 84 of 4 2.73Up
Thoracicoabdominal ganglion31 14 of 4 0.50Down
Salivary gland112 74 of 4 1.82Up
Crop197 54 of 4 3.20Up
Midgut10 01 of 4 0.20Down
Tubule60 124 of 4 1.00None
Hindgut121 24 of 4 2.00Up
Heart16 14 of 4 0.26Down
Fat body17 44 of 4 0.29Down
Ovary101 24 of 4 1.60Up
Testis44 14 of 4 0.70Down
Male accessory glands156 104 of 4 2.50Up
Virgin spermatheca331 74 of 4 5.38Up
Mated spermatheca395 434 of 4 6.41Up
Adult carcass63 34 of 4 1.00None
Larval CNS34 34 of 4 0.55Down
Larval Salivary gland198 74 of 4 3.21Up
Larval midgut13 10 of 4 0.22Down
Larval tubule24 14 of 4 0.40Down
Larval hindgut130 24 of 4 2.11Up
Larval fat body18 13 of 4 0.30Down
Larval trachea252 184 of 4 4.10Up
Larval carcass98 174 of 4 1.60None
S2 cells (growing)0 00 of 4 0.01Down
Whole fly61 54 of 4

Looking for FBgn0036773. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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