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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036780 through 18771 annotations produced 1 hits



(CG7330):

Annotation Number : CG7330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036780
Gbrowse : chr3L:18142024-18146719 (+) // 99.49 //
Probeset : 1637706_at
Accessions : protein= NP_649032;, nucleotide= NM_140775;
FlyMine data for FBgn0036780.
TRiP has 1 RNAi stocks for FBgn0036780 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 0.40Down
Head28 ± 34 of 4 0.60Down
Eye7 ± 20 of 4 0.17Down
Thoracicoabdominal ganglion24 ± 14 of 4 0.50Down
Salivary gland39 ± 93 of 4 0.87None
Crop21 ± 14 of 4 0.50Down
Midgut53 ± 64 of 4 1.20None
Tubule15 ± 02 of 4 0.30Down
Hindgut27 ± 24 of 4 0.60Down
Heart13 ± 33 of 4 0.30Down
Fat body33 ± 64 of 4 0.74Down
Ovary11 ± 14 of 4 0.20Down
Testis8 ± 10 of 4 0.20Down
Male accessory glands22 ± 14 of 4 0.50Down
Virgin spermatheca18 ± 14 of 4 0.40Down
Mated spermatheca20 ± 23 of 4 0.45Down
Adult carcass39 ± 54 of 4 0.90None
Larval CNS13 ± 24 of 4 0.30Down
Larval Salivary gland29 ± 14 of 4 0.65Down
Larval midgut55 ± 34 of 4 1.22None
Larval tubule25 ± 24 of 4 0.60Down
Larval hindgut117 ± 144 of 4 2.60Up
Larval fat body23 ± 43 of 4 0.50Down
Larval trachea88 ± 274 of 4 1.97Up
Larval carcass41 ± 44 of 4 0.93None
S2 cells (growing)22 ± 14 of 4 0.50Down
Whole fly45 ± 24 of 4

Looking for FBgn0036780. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime