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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036783 through 18771 annotations produced 1 hits



CheA75a (CheA75a):

Annotation Number : CG7313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036783
Gbrowse : chr3L:18245196-18245946 (+) // 100.0 //
Probeset : 1624808_at
Accessions : protein= NP_649035;, nucleotide= NM_140778;
FlyMine data for FBgn0036783.
BDGP gene expression has embryonic in situ data for CG7313: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036783 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye2 00 of 4 0.01Down
Thoracicoabdominal ganglion8 41 of 4 0.00Down
Salivary gland11 40 of 4 0.06Down
Crop5 10 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule4 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart3 10 of 4 0.02Down
Fat body4 30 of 4 0.02Down
Ovary1 00 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands8 40 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.01Down
Mated spermatheca2 10 of 4 0.01Down
Adult carcass1202 1074 of 4 5.90Up
Larval CNS3 20 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.01Down
Larval midgut4 10 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body3 10 of 4 0.00Down
Larval trachea1 10 of 4 0.01Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly202 104 of 4

Looking for FBgn0036783. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime