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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036785 through 18771 annotations produced 1 hits


(CG13700):

Annotation Number : CG13700
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036785
Gbrowse : chr3L:18291986-18294360 (-) // 100.0 //
Probeset : 1635408_at
Accessions : protein= NP_649037;, nucleotide= NM_140780;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036785.
BDGP gene expression has embryonic in situ data for CG13700: 4 pix of staining in 1 body parts.
BioGrid reports that CG13700 interacts with CG14991 CG15781 CG5225 CG5358 CG6707 CG7826 CG17757 .
VDRC has 1 RNAi stocks for FBgn0036785 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland7 ± 20 of 4 0.07Down
Crop2 ± 10 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.03Down
Fat body3 ± 40 of 4 0.03Down
Ovary2 ± 10 of 4 0.00Down
Testis1044 ± 444 of 410.90Up
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca6 ± 10 of 4 0.07Down
Adult carcass8 ± 10 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut3 ± 00 of 4 0.03Down
Larval tubule2 ± 01 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.03Down
Larval fat body93 ± 473 of 4 1.00None
Larval trachea6 ± 71 of 4 0.06Down
Larval carcass2 ± 00 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly96 ± 84 of 4

Looking for FBgn0036785. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime