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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036787 through 18771 annotations produced 1 hits



(CG4306):

Annotation Number : CG4306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036787
Gbrowse : chr3L:18455053-18456257 (-) // 100.0 //
Probeset : 1627007_at
Accessions : protein= NP_649038;, nucleotide= NM_140781;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036787.
BDGP gene expression has embryonic in situ data for CG4306: 17 pix of staining in 2 body parts.
BioGrid reports that CG4306 interacts with CG5445 .
VDRC has 1 RNAi stocks for FBgn0036787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 0.30Down
Head228 ± 174 of 4 4.60Up
Eye107 ± 204 of 4 2.15None
Thoracicoabdominal ganglion14 ± 24 of 4 0.30Down
Salivary gland17 ± 31 of 4 0.34Down
Crop10 ± 13 of 4 0.20Down
Midgut41 ± 44 of 4 0.80None
Tubule9 ± 11 of 4 0.20Down
Hindgut10 ± 04 of 4 0.20Down
Heart31 ± 24 of 4 0.63None
Fat body48 ± 104 of 4 0.97None
Ovary8 ± 13 of 4 0.20Down
Testis300 ± 54 of 4 6.00Up
Male accessory glands12 ± 22 of 4 0.30Down
Virgin spermatheca21 ± 34 of 4 0.44Down
Mated spermatheca19 ± 14 of 4 0.40Down
Adult carcass87 ± 54 of 4 1.80Up
Larval CNS7 ± 14 of 4 0.14Down
Larval Salivary gland72 ± 64 of 4 1.45None
Larval midgut67 ± 34 of 4 1.34None
Larval tubule8 ± 22 of 4 0.20Down
Larval hindgut52 ± 94 of 4 1.05None
Larval fat body2718 ± 2394 of 454.40Up
Larval trachea35 ± 184 of 4 0.71None
Larval carcass126 ± 64 of 4 2.52Up
S2 cells (growing)3 ± 10 of 4 0.07Down
Whole fly50 ± 74 of 4

Looking for FBgn0036787. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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