FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036789 through 18771 annotations produced 3 hits

Drosophila allatostatin C receptor 2 (AlCR2):

Annotation Number : CG13702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036789
Gbrowse : chr3L:18480572-18481904 (-) // 100.0 //
Probeset : 1625946_at
Accessions : protein= NP_001027135; /// NP_649039;, nucleotide= NM_001031964; /// NM_140782;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0036789.
Homophila reports that CG13702 is a close match (4e-11) to human gene BCP;CBT;OPN1SW (NP_001699), a gene associated with Colorblindness, tritan (3).
TRiP has 2 RNAi stocks for FBgn0036789 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036789 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	1 of 4	2.70	None
Head	2 ± 1	0 of 4	1.40	None
Eye	0 ± 0	0 of 4	0.27	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.70	None
Salivary gland	12 ± 2	0 of 4	8.20	Up
Crop	3 ± 1	0 of 4	2.60	None
Midgut	0 ± 0	0 of 4	0.30	None
Tubule	1 ± 0	0 of 4	0.90	None
Hindgut	2 ± 0	0 of 4	1.50	None
Heart	1 ± 0	0 of 4	0.71	None
Fat body	3 ± 3	0 of 4	2.10	None
Ovary	0 ± 0	0 of 4	0.50	None
Testis	1 ± 1	0 of 4	1.00	None
Male accessory glands	3 ± 1	0 of 4	2.20	None
Virgin spermatheca	1 ± 0	0 of 4	0.75	None
Mated spermatheca	1 ± 0	0 of 4	1.10	None
Adult carcass	0 ± 0	0 of 4	0.60	None
Larval CNS	4 ± 2	1 of 4	3.31	None
Larval Salivary gland	5 ± 1	0 of 4	3.64	None
Larval midgut	0 ± 0	0 of 4	0.19	None
Larval tubule	3 ± 1	0 of 4	2.00	None
Larval hindgut	2 ± 2	0 of 4	1.92	None
Larval fat body	3 ± 1	0 of 4	2.00	None
Larval trachea	0 ± 0	0 of 4	0.20	None
Larval carcass	1 ± 1	0 of 4	0.98	None
S2 cells (growing)	1 ± 0	0 of 4	1.20	None
Whole fly	1 ± 0	0 of 4

Drosophila allatostatin C receptor 2 (AlCR2):

Annotation Number : CG13702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036789
Gbrowse : chr3L:18480572-18481904 (-) // 100.0 //
Probeset : 1624643_a_at
Accessions : protein= NP_001027135; /// NP_649039;, nucleotide= NM_001031964; /// NM_140782;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0036789.
Homophila reports that CG13702 is a close match (4e-11) to human gene BCP;CBT;OPN1SW (NP_001699), a gene associated with Colorblindness, tritan (3).
TRiP has 2 RNAi stocks for FBgn0036789 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036789 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 2	1 of 4	1.80	None
Head	3 ± 1	0 of 4	0.70	None
Eye	0 ± 0	0 of 4	0.18	Down
Thoracicoabdominal ganglion	6 ± 1	0 of 4	1.20	None
Salivary gland	18 ± 1	1 of 4	3.34	Up
Crop	11 ± 2	0 of 4	2.10	None
Midgut	15 ± 1	0 of 4	2.80	Up
Tubule	2 ± 0	0 of 4	0.40	Down
Hindgut	6 ± 1	0 of 4	1.10	None
Heart	3 ± 2	0 of 4	0.60	None
Fat body	9 ± 6	0 of 4	1.76	None
Ovary	2 ± 1	0 of 4	0.50	None
Testis	8 ± 0	1 of 4	1.60	None
Male accessory glands	11 ± 0	1 of 4	2.00	Up
Virgin spermatheca	3 ± 1	0 of 4	0.60	None
Mated spermatheca	3 ± 1	0 of 4	0.55	None
Adult carcass	9 ± 2	0 of 4	1.60	None
Larval CNS	10 ± 1	0 of 4	1.89	Up
Larval Salivary gland	6 ± 2	0 of 4	1.11	None
Larval midgut	3 ± 0	0 of 4	0.72	None
Larval tubule	4 ± 1	0 of 4	0.80	None
Larval hindgut	6 ± 1	0 of 4	1.24	None
Larval fat body	6 ± 2	0 of 4	1.20	None
Larval trachea	3 ± 2	0 of 4	0.57	None
Larval carcass	5 ± 1	0 of 4	1.00	None
S2 cells (growing)	6 ± 1	0 of 4	1.14	None
Whole fly	5 ± 1	0 of 4

Drosophila allatostatin C receptor 2 (AlCR2):

Annotation Number : CG13702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036789
Gbrowse : chr3L:18479828-18481904 (-) // 100.0 //
Probeset : 1634889_at
Accessions : protein= NP_001027135; /// NP_649039;, nucleotide= NM_001031964; /// NM_140782;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0036789.
Homophila reports that CG13702 is a close match (4e-11) to human gene BCP;CBT;OPN1SW (NP_001699), a gene associated with Colorblindness, tritan (3).
TRiP has 2 RNAi stocks for FBgn0036789 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036789 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	4.20	None
Head	1 ± 0	0 of 4	0.90	None
Eye	1 ± 0	0 of 4	0.79	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	1.50	None
Salivary gland	6 ± 1	0 of 4	4.27	None
Crop	2 ± 1	0 of 4	1.80	None
Midgut	10 ± 2	0 of 4	7.10	Up
Tubule	1 ± 0	0 of 4	0.90	Down
Hindgut	1 ± 0	0 of 4	0.90	None
Heart	0 ± 0	0 of 4	0.68	None
Fat body	2 ± 0	0 of 4	1.59	None
Ovary	1 ± 0	0 of 4	0.80	None
Testis	3 ± 1	0 of 4	2.70	None
Male accessory glands	1 ± 0	0 of 4	1.30	None
Virgin spermatheca	3 ± 0	0 of 4	2.25	Up
Mated spermatheca	2 ± 0	0 of 4	1.80	Up
Adult carcass	2 ± 0	0 of 4	1.70	None
Larval CNS	2 ± 1	0 of 4	1.52	None
Larval Salivary gland	4 ± 1	0 of 4	3.39	None
Larval midgut	4 ± 0	0 of 4	2.84	Up
Larval tubule	4 ± 1	0 of 4	3.20	None
Larval hindgut	1 ± 0	0 of 4	0.80	None
Larval fat body	4 ± 2	0 of 4	3.30	None
Larval trachea	0 ± 0	0 of 4	0.66	None
Larval carcass	1 ± 0	0 of 4	1.07	None
S2 cells (growing)	1 ± 0	0 of 4	1.11	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0036789. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720