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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036796 through 18771 annotations produced 1 hits



(CG18231):

Annotation Number : CG18231
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036796
Gbrowse : chr3L:18600686-18602395 (+) // 100.0 //
Probeset : 1630422_at
Accessions : protein= NP_649045;, nucleotide= NM_140788;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005506 // iron ion bi
FlyMine data for FBgn0036796.
VDRC has 3 RNAi stocks for FBgn0036796 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion3 ± 12 of 4 0.10Down
Salivary gland6 ± 21 of 4 0.12Down
Crop4 ± 11 of 4 0.10Down
Midgut3 ± 00 of 4 0.10Down
Tubule7 ± 00 of 4 0.10Down
Hindgut5 ± 11 of 4 0.10Down
Heart2 ± 00 of 4 0.04Down
Fat body8 ± 22 of 4 0.16Down
Ovary2 ± 11 of 4 0.00Down
Testis6 ± 11 of 4 0.10Down
Male accessory glands5032 ± 1474 of 490.10Up
Virgin spermatheca7 ± 11 of 4 0.13Down
Mated spermatheca2 ± 10 of 4 0.04Down
Adult carcass11 ± 12 of 4 0.20Down
Larval CNS4 ± 22 of 4 0.08Down
Larval Salivary gland6 ± 20 of 4 0.12Down
Larval midgut4 ± 10 of 4 0.07Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut3 ± 01 of 4 0.06Down
Larval fat body4 ± 21 of 4 0.10Down
Larval trachea3 ± 10 of 4 0.06Down
Larval carcass2 ± 01 of 4 0.04Down
S2 cells (growing)5 ± 02 of 4 0.10Down
Whole fly55 ± 54 of 4

Looking for FBgn0036796. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime