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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036799 through 18771 annotations produced 2 hits


/// (CG13380 /// CG4174):

Annotation Number : CG13380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036793 /// FBgn0036799
Gbrowse : chr3L:18608840-18611031 (-) // 100.0 //
Probeset : 1626491_at
Accessions : protein= NP_001034030; /// NP_001034031; /// NP_001034032; /// NP_730342;, nucleotide= NM_001038941; /// NM_001038942; /// NM_001038943; /// NM_168768;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from sequence or structural similarity /// 0004656 //
FlyMine data for FBgn0036793 /// FBgn0036799.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.17Down
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.10Down
Fat body3 ± 20 of 4 0.16Down
Ovary38 ± 14 of 4 1.90Up
Testis8 ± 10 of 4 0.40Down
Male accessory glands22 ± 43 of 4 1.10None
Virgin spermatheca1 ± 00 of 4 0.08Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS1 ± 00 of 4 0.09Down
Larval Salivary gland1 ± 00 of 4 0.09Down
Larval midgut2 ± 10 of 4 0.13Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.12Down
Larval fat body14 ± 41 of 4 0.70None
Larval trachea1 ± 10 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly20 ± 14 of 4


March 2006 (FlyBase/BDGP 5.3) (chr3L:18593249-18595153 (-) // 100.0 //):

Annotation Number : CG4174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1623242_at
Accessions : protein= EC:1.13.11.- /// EC:1.14.11.2, nucleotide=
Interpro : 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from sequence or structural similarity ///


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland5 ± 20 of 4 0.44None
Crop3 ± 00 of 4 0.30Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.12Down
Fat body3 ± 21 of 4 0.31Down
Ovary17 ± 04 of 4 1.50Up
Testis6 ± 02 of 4 0.60Down
Male accessory glands1469 ± 604 of 4126.20Up
Virgin spermatheca2 ± 10 of 4 0.19Down
Mated spermatheca1 ± 00 of 4 0.11Down
Adult carcass4 ± 10 of 4 0.40Down
Larval CNS1 ± 10 of 4 0.13Down
Larval Salivary gland1 ± 10 of 4 0.12Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.21Down
Larval fat body4 ± 20 of 4 0.40Down
Larval trachea2 ± 10 of 4 0.21Down
Larval carcass2 ± 00 of 4 0.21Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly11 ± 14 of 4

Looking for FBgn0036799. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime