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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036805 through 18771 annotations produced 1 hits



Chmp1 (Chmp1):

Annotation Number : CG4108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036805
Gbrowse : chr3L:18676242-18677159 (-) // 100.0 //
Probeset : 1630958_at
Accessions : protein= NP_649051;, nucleotide= NM_140794;
FlyMine data for FBgn0036805.
TRiP has 2 RNAi stocks for FBgn0036805 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036805 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain277 ± 54 of 4 1.40Up
Head270 ± 104 of 4 1.30Up
Eye332 ± 294 of 4 1.63Up
Thoracicoabdominal ganglion330 ± 114 of 4 1.60Up
Salivary gland340 ± 174 of 4 1.67Up
Crop444 ± 114 of 4 2.20Up
Midgut358 ± 84 of 4 1.80Up
Tubule515 ± 194 of 4 2.50Up
Hindgut323 ± 54 of 4 1.60Up
Heart334 ± 74 of 4 1.64Up
Fat body173 ± 164 of 4 0.85Down
Ovary157 ± 44 of 4 0.80Down
Testis174 ± 34 of 4 0.90Down
Male accessory glands470 ± 304 of 4 2.30Up
Virgin spermatheca292 ± 124 of 4 1.43Up
Mated spermatheca294 ± 84 of 4 1.44Up
Adult carcass275 ± 54 of 4 1.30Up
Larval CNS225 ± 114 of 4 1.10None
Larval Salivary gland478 ± 94 of 4 2.34Up
Larval midgut359 ± 284 of 4 1.76Up
Larval tubule477 ± 144 of 4 2.30Up
Larval hindgut315 ± 214 of 4 1.55Up
Larval fat body340 ± 334 of 4 1.70Up
Larval trachea402 ± 564 of 4 1.97Up
Larval carcass185 ± 234 of 4 0.91None
S2 cells (growing)448 ± 24 of 4 2.20Up
Whole fly204 ± 94 of 4

Looking for FBgn0036805. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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