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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036807 through 18771 annotations produced 1 hits



(CG6893):

Annotation Number : CG6893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036807
Gbrowse : chr3L:18687929-18689312 (+) // 100.0 //
Probeset : 1632615_at
Accessions : protein= NP_649053;, nucleotide= NM_140796;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from ele
Interpro : 0005310 // dicarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0
FlyMine data for FBgn0036807.
VDRC has 2 RNAi stocks for FBgn0036807 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head2 00 of 4 0.20Down
Eye3 11 of 4 0.27Down
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland12 20 of 4 0.87None
Crop3 00 of 4 0.20Down
Midgut6 20 of 4 0.40None
Tubule2 00 of 4 0.20Down
Hindgut3 00 of 4 0.20Down
Heart2 10 of 4 0.18Down
Fat body2 10 of 4 0.18Down
Ovary0 00 of 4 0.00Down
Testis238 34 of 416.40Up
Male accessory glands6 20 of 4 0.50Down
Virgin spermatheca3 10 of 4 0.23Down
Mated spermatheca3 10 of 4 0.22Down
Adult carcass3 10 of 4 0.20Down
Larval CNS1 11 of 4 0.13Down
Larval Salivary gland4 10 of 4 0.32Down
Larval midgut4 00 of 4 0.28Down
Larval tubule3 10 of 4 0.30Down
Larval hindgut2 00 of 4 0.14Down
Larval fat body37 203 of 4 2.60None
Larval trachea4 01 of 4 0.29Down
Larval carcass4 00 of 4 0.28Down
S2 cells (growing)2 00 of 4 0.20Down
Whole fly14 24 of 4

Looking for FBgn0036807. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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