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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036808 through 18771 annotations produced 1 hits


(CG18363):

Annotation Number : CG18363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036808
Gbrowse : chr3L:18690262-18691371 (-) // 100.0 //
Probeset : 1635632_at
Accessions : protein= NP_649054;, nucleotide= NM_140797;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005488 // binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred
FlyMine data for FBgn0036808.
Homophila reports that CG18363 is a close match (1e-28) to human gene UCP3 (NP_073714), a gene associated with {Obesity, severe, and type II diabetes}, 601665 (3).
VDRC has 1 RNAi stocks for FBgn0036808 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head4 ± 10 of 4 0.30Down
Eye2 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland8 ± 20 of 4 0.52Down
Crop3 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.30Down
Hindgut3 ± 10 of 4 0.20Down
Heart4 ± 10 of 4 0.28Down
Fat body3 ± 30 of 4 0.23Down
Ovary1 ± 00 of 4 0.10Down
Testis217 ± 54 of 414.10Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.16Down
Mated spermatheca3 ± 10 of 4 0.20Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.10Down
Larval Salivary gland0 ± 00 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.13Down
Larval fat body32 ± 134 of 4 2.10None
Larval trachea1 ± 00 of 4 0.07Down
Larval carcass1 ± 00 of 4 0.10Down
S2 cells (growing)1 ± 00 of 4 0.09Down
Whole fly15 ± 14 of 4

Looking for FBgn0036808. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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