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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036810 through 18771 annotations produced 1 hits



(CG6885):

Annotation Number : CG6885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036810
Gbrowse : chr3L:18737593-18738799 (+) // 99.67 //
Probeset : 1634536_at
Accessions : protein= NP_649056;, nucleotide= NM_140799;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0036810.
BDGP gene expression has embryonic in situ data for CG6885: 27 pix of staining in 6 body parts.
VDRC has 1 RNAi stocks for FBgn0036810 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 2.40None
Head3 ± 10 of 4 1.80None
Eye4 ± 10 of 4 2.54None
Thoracicoabdominal ganglion5 ± 20 of 4 2.90None
Salivary gland17 ± 80 of 4 9.31None
Crop9 ± 11 of 4 5.20Up
Midgut4 ± 20 of 4 2.40None
Tubule6 ± 00 of 4 3.50Up
Hindgut6 ± 00 of 4 3.60Up
Heart2 ± 10 of 4 1.49None
Fat body10 ± 20 of 4 5.62Up
Ovary1 ± 00 of 4 0.90None
Testis1 ± 00 of 4 1.00None
Male accessory glands3 ± 00 of 4 2.00None
Virgin spermatheca7 ± 20 of 4 3.76None
Mated spermatheca2 ± 10 of 4 1.49None
Adult carcass4 ± 00 of 4 2.10None
Larval CNS5 ± 10 of 4 2.89Up
Larval Salivary gland10 ± 10 of 4 5.53Up
Larval midgut2 ± 00 of 4 1.45None
Larval tubule8 ± 32 of 4 4.40None
Larval hindgut5 ± 01 of 4 2.85Up
Larval fat body7 ± 20 of 4 3.90None
Larval trachea4 ± 31 of 4 2.35None
Larval carcass2 ± 10 of 4 1.55None
S2 cells (growing)5 ± 10 of 4 2.78None
Whole fly1 ± 00 of 4

Looking for FBgn0036810. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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