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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036811 through 18771 annotations produced 1 hits



Mediator complex subunit 11 (MED11):

Annotation Number : CG6884
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036811
Gbrowse : chr3L:18739001-18739718 (+) // 100.0 //
Probeset : 1637993_at
Accessions : protein= NP_649057;, nucleotide= NM_140800;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from direct assay
Interpro : 0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0036811.
BioGrid reports that CG6884 interacts with CG7957 CG9473 CG18780 .
TRiP has 1 RNAi stocks for FBgn0036811 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036811 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 34 of 4 1.00None
Head93 ± 34 of 4 0.90None
Eye138 ± 54 of 4 1.34Up
Thoracicoabdominal ganglion100 ± 44 of 4 1.00None
Salivary gland252 ± 44 of 4 2.44Up
Crop176 ± 44 of 4 1.70Up
Midgut102 ± 54 of 4 1.00None
Tubule34 ± 24 of 4 0.30Down
Hindgut142 ± 44 of 4 1.40Up
Heart170 ± 74 of 4 1.65Up
Fat body127 ± 104 of 4 1.23Up
Ovary130 ± 14 of 4 1.30Up
Testis32 ± 14 of 4 0.30Down
Male accessory glands174 ± 54 of 4 1.70Up
Virgin spermatheca44 ± 04 of 4 0.43Down
Mated spermatheca46 ± 44 of 4 0.45Down
Adult carcass147 ± 44 of 4 1.40Up
Larval CNS320 ± 84 of 4 3.09Up
Larval Salivary gland164 ± 94 of 4 1.59Up
Larval midgut87 ± 34 of 4 0.84Down
Larval tubule131 ± 64 of 4 1.30Up
Larval hindgut99 ± 24 of 4 0.96None
Larval fat body136 ± 174 of 4 1.30None
Larval trachea209 ± 54 of 4 2.02Up
Larval carcass147 ± 114 of 4 1.42Up
S2 cells (growing)182 ± 14 of 4 1.76Up
Whole fly103 ± 34 of 4

Looking for FBgn0036811. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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