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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036814 through 18771 annotations produced 1 hits



Nirvana (CG14073):

Annotation Number : CG14073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036814
Gbrowse : chr3L:18795361-18802512 (-) // 100.0 //
Probeset : 1628759_a_at
Accessions : protein= NP_649060; /// NP_730361;, nucleotide= NM_140803; /// NM_168776;
Pathway : 0005876 // spindle microtubule // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036814.
Homophila reports that CG14073 is a close match (5e-11) to human gene ANK2;LQT4 (NP_066187), a gene associated with Cardiac arrhythmia, ankyrin-B-related, 600919 (3);Long QT syndrome-4, 600919 (3).
BioGrid reports that CG14073 interacts with CG4195 CG4300 CG3751 CG4286 .
VDRC has 2 RNAi stocks for FBgn0036814 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain202 44 of 4 2.90Up
Head58 74 of 4 0.90None
Eye82 124 of 4 1.19None
Thoracicoabdominal ganglion131 124 of 4 1.90Up
Salivary gland67 114 of 4 0.98None
Crop137 114 of 4 2.00Up
Midgut40 34 of 4 0.60Down
Tubule37 24 of 4 0.50Down
Hindgut73 94 of 4 1.10None
Heart82 94 of 4 1.20None
Fat body84 164 of 4 1.22None
Ovary211 184 of 4 3.10Up
Testis159 94 of 4 2.30Up
Male accessory glands58 34 of 4 0.80None
Virgin spermatheca100 54 of 4 1.45Up
Mated spermatheca117 104 of 4 1.70Up
Adult carcass52 94 of 4 0.80None
Larval CNS110 34 of 4 1.60Up
Larval Salivary gland110 104 of 4 1.59Up
Larval midgut45 74 of 4 0.66None
Larval tubule141 204 of 4 2.00Up
Larval hindgut69 64 of 4 1.00None
Larval fat body136 114 of 4 2.00Up
Larval trachea125 164 of 4 1.81Up
Larval carcass125 124 of 4 1.81Up
S2 cells (growing)83 94 of 4 1.20None
Whole fly69 64 of 4

Looking for FBgn0036814. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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