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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036815 through 18771 annotations produced 1 hits



lethal (3) neo26 (HipHop):

Annotation Number : CG6874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036815
Gbrowse : chr3L:18814272-18815454 (+) // 100.0 //
Probeset : 1625792_s_at
Accessions : protein= NP_649061; /// NP_730362;, nucleotide= NM_140804; /// NM_168777;
Pathway : "0000781 // chromosome
Interpro : telomeric region // inferred from direct assay"
FlyMine data for FBgn0036815.
VDRC has 3 RNAi stocks for FBgn0036815 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 4 0.10Down
Head22 ± 24 of 4 0.10Down
Eye43 ± 24 of 4 0.18Down
Thoracicoabdominal ganglion30 ± 24 of 4 0.10Down
Salivary gland12 ± 30 of 4 0.05Down
Crop28 ± 14 of 4 0.10Down
Midgut9 ± 21 of 4 0.00Down
Tubule17 ± 21 of 4 0.10Down
Hindgut16 ± 21 of 4 0.10Down
Heart94 ± 64 of 4 0.39Down
Fat body83 ± 74 of 4 0.35Down
Ovary602 ± 124 of 4 2.50Up
Testis17 ± 14 of 4 0.10Down
Male accessory glands15 ± 51 of 4 0.10Down
Virgin spermatheca33 ± 24 of 4 0.14Down
Mated spermatheca24 ± 14 of 4 0.10Down
Adult carcass42 ± 44 of 4 0.20Down
Larval CNS295 ± 294 of 4 1.22Up
Larval Salivary gland19 ± 34 of 4 0.08Down
Larval midgut9 ± 10 of 4 0.04Down
Larval tubule14 ± 14 of 4 0.10Down
Larval hindgut18 ± 14 of 4 0.08Down
Larval fat body24 ± 34 of 4 0.10Down
Larval trachea77 ± 94 of 4 0.32Down
Larval carcass29 ± 14 of 4 0.12Down
S2 cells (growing)232 ± 24 of 4 0.96None
Whole fly241 ± 104 of 4

Looking for FBgn0036815. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime