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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036816 through 18771 annotations produced 1 hits



I'm not dead yet (Indy):

Annotation Number : CG3979
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036816
Gbrowse : chr3L:18821731-18839360 (-) // 100.0 //
Probeset : 1641566_s_at
Accessions : protein= NP_001163465; /// NP_524150; /// NP_730363; /// NP_730364;, nucleotide= NM_001169994; /// NM_079426; /// NM_168778; /// NM_168779;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0036816.
BDGP gene expression has embryonic in situ data for Indy: 31 pix of staining in 9 body parts.
VDRC has 2 RNAi stocks for FBgn0036816 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain404 ± 154 of 4 0.40Down
Head1036 ± 724 of 4 1.10None
Eye939 ± 584 of 4 1.00None
Thoracicoabdominal ganglion612 ± 274 of 4 0.70Down
Salivary gland3809 ± 1514 of 4 4.07Up
Crop2686 ± 1024 of 4 2.90Up
Midgut1231 ± 204 of 4 1.30Up
Tubule1008 ± 3054 of 4 1.10None
Hindgut1398 ± 324 of 4 1.50Up
Heart3966 ± 1424 of 4 4.24Up
Fat body4585 ± 4324 of 4 4.90Up
Ovary922 ± 64 of 4 1.00None
Testis628 ± 324 of 4 0.70Down
Male accessory glands254 ± 104 of 4 0.30Down
Virgin spermatheca3346 ± 1634 of 4 3.58Up
Mated spermatheca2879 ± 794 of 4 3.08Up
Adult carcass2207 ± 994 of 4 2.40Up
Larval CNS288 ± 194 of 4 0.31Down
Larval Salivary gland589 ± 634 of 4 0.63Down
Larval midgut1028 ± 904 of 4 1.10None
Larval tubule341 ± 214 of 4 0.40Down
Larval hindgut1268 ± 934 of 4 1.36Up
Larval fat body2519 ± 2574 of 4 2.70Up
Larval trachea1096 ± 694 of 4 1.17Up
Larval carcass1394 ± 714 of 4 1.49Up
S2 cells (growing)1559 ± 194 of 4 1.67Up
Whole fly935 ± 184 of 4

Looking for FBgn0036816. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime