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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036817 through 18771 annotations produced 1 hits



(CG6865):

Annotation Number : CG6865
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036817
Gbrowse : chr3L:18857348-18858521 (+) // 100.0 //
Probeset : 1632933_at
Accessions : protein= NP_649062;, nucleotide= NM_140805;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036817.
Homophila reports that CG6865 is a close match (4e-12) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
VDRC has 3 RNAi stocks for FBgn0036817 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 2.90None
Head1 ± 00 of 4 1.20None
Eye1 ± 00 of 4 1.43None
Thoracicoabdominal ganglion2 ± 10 of 4 2.70None
Salivary gland3 ± 10 of 4 3.97None
Crop1 ± 00 of 4 2.20None
Midgut2 ± 10 of 4 2.30None
Tubule2 ± 00 of 4 2.30Up
Hindgut2 ± 10 of 4 2.20None
Heart0 ± 00 of 4 0.34None
Fat body0 ± 00 of 4 0.69None
Ovary1 ± 00 of 4 1.10None
Testis2 ± 10 of 4 2.50None
Male accessory glands2 ± 10 of 4 3.30None
Virgin spermatheca0 ± 00 of 4 1.06None
Mated spermatheca0 ± 00 of 4 0.83None
Adult carcass2 ± 10 of 4 3.30None
Larval CNS10 ± 01 of 411.69Up
Larval Salivary gland6 ± 20 of 4 6.91None
Larval midgut1 ± 00 of 4 1.09None
Larval tubule2 ± 00 of 4 2.80None
Larval hindgut8 ± 41 of 410.06None
Larval fat body3 ± 10 of 4 3.90None
Larval trachea1 ± 10 of 4 2.20None
Larval carcass4 ± 10 of 4 5.06None
S2 cells (growing)0 ± 00 of 4 0.63None
Whole fly0 ± 00 of 4

Looking for FBgn0036817. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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